Gene Information

Name : Alide_2711 (Alide_2711)
Accession : YP_004127330.1
Strain : Alicycliphilus denitrificans BC
Genome accession: NC_014910
Putative virulence/resistance : Unknown
Product : integrase catalytic region protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2804418 - 2805332 bp
Length : 915 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: ajs:Ajs_0907 integrase catalytic subunit

DNA sequence : 
GTGAAGGCCTACATCGACCGCCACCGTGATGACTACGGGGTCGAGCCCATCTGCCGGGCGCTGCAGATGGCCCCGTCGTG
TTACTGGCGCCACGCAGCCCGGCAACGCAACGCGCAACTGCGCAGTGCACGCGCCCAGCGTGACGAGGGTTTGAAGGCCG
ACATTCAGCGCGTGTGGCACGCCAACTGGCAGGTCTACGGAGCCGACAAGGTCTGGCTGCAGATGAACCGCGAGGGCATC
GTGGTGGCGCGCTGCACGGTCGAGCGTCTGATGCGTGCCATGGGCTTGCAAGGGGCACGCCGTGGCAGGGCGGTGCGCAC
CACCACGCCGGATACCTCGGCCCCGTGCCCGCTGGACCACGTCAACCGGCACTTCCATGCCAGCCGTCCCAACGAGCTAT
GGGTGTCGGACTTCACCTATGTCTCCACCTGGCAAGGCTGGTTGTATGTGGCCTTTGTGGTGGATGTGTACGCTCGGCGC
ATCGTGGGCTGGCGCGTCAGTCGCAGCATGCAGACGGACTTCGTGCTCGATGCCCTGGAGCAGGCCTTGTACGACCGTCA
GCCTGCGGCTCATGCATTGACGCACCATTCCGATAGGGGCAGTCAGTACGTTTCCATACGCTACACCGAACGCTTGGACC
AGGCGGGCATACAACCTTCGGTGGGCAGCAGGGGAGACAGCTATGACAACGCGCTGGCCGAGACCATCAACGGTCTGTAC
AAGGCCGAGTTGATTCACCGCCGGGGACCTTGGAAGACCAGGGAATCCGTGGAACTGGCCACCCTGCAATGGGTGCACTG
GTTCAACCACGTCCGATTGCTCACGCCGATTGGGGGCATCCCTCCGGCAGAAGCTGAGGCAAACTACTGGAGGCAACTCG
CCGCCAGCGACACCTCGACAAAGGTGTCAACTTAA

Protein sequence : 
MKAYIDRHRDDYGVEPICRALQMAPSCYWRHAARQRNAQLRSARAQRDEGLKADIQRVWHANWQVYGADKVWLQMNREGI
VVARCTVERLMRAMGLQGARRGRAVRTTTPDTSAPCPLDHVNRHFHASRPNELWVSDFTYVSTWQGWLYVAFVVDVYARR
IVGWRVSRSMQTDFVLDALEQALYDRQPAAHALTHHSDRGSQYVSIRYTERLDQAGIQPSVGSRGDSYDNALAETINGLY
KAELIHRRGPWKTRESVELATLQWVHWFNHVRLLTPIGGIPPAEAEANYWRQLAASDTSTKVST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 9e-55 61
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 5e-55 61
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 1e-61 61
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 6e-70 59
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-73 58
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 4e-73 58
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-73 58
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 5e-70 58
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 5e-70 58
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 5e-70 58
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-70 58
Z1221 NP_286756.1 transposase Not tested TAI Protein 7e-72 58
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 3e-72 58
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-72 58
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 2e-72 58
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-71 58
Z1198 NP_286733.1 transposase Not tested TAI Protein 8e-72 58
Z1638 NP_287141.1 transposase Not tested TAI Protein 8e-72 58
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 8e-73 57
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-50 57
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-69 56
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 5e-50 46
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-34 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide_2711 YP_004127330.1 integrase catalytic region protein VFG1602 Protein 9e-70 56