Gene Information

Name : Alide_2543 (Alide_2543)
Accession : YP_004127163.1
Strain : Alicycliphilus denitrificans BC
Genome accession: NC_014910
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 2615550 - 2616272 bp
Length : 723 bp
Strand : -
Note : KEGG: dia:Dtpsy_1604 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGTCCGAACCCTTCGCCGCTGCGGCAACAACCACCGCTTCCGAGTCGCCCGTGCCCCCGGAGCCCATCATCGCGGTGGA
GCATGTGTACAAGTCGGTCACCGACTCCACGGGCACGCTGGAGATTTTGCGGGATATCGATTTCCGCCTCGCGCCGCAGG
AGACCGCCGCCATTGTCGGCGCCTCGGGGTCGGGCAAGAGCACGCTGCTGTCCATCATCGCAGGGCTGGATACGCCCACG
CGCGGCACGGTGCTGCTGGCGGGGCAGGACCTGTTCGCGCTGGACGAGGACGAGCGCGCCGCGCTGCGCGCGCGCCAGGT
GGGCTTCGTATTCCAGAGCTTCCAGCTCCTGGGCAACCTCACGGCGCTGGAGAACGTGATGCTGCCGCTGGAGCTGGCCG
GCAGCCGCGACGCGCGCCGCCGCGCGACCGAGATGCTGGGCCGCGTGGGTCTGGGCCAGCGCCTGTCGCACTATCCCAAG
GTGCTCTCGGGTGGCGAGCAGCAGCGCGTGGCGCTGGCGCGCGCCTTCGTGGTCGAGCCGGCCGTGCTGCTGGCCGACGA
GCCCACGGGCAGCCTGGATTTCGCCACCGGCGAGACCATCATGGAGCTGATGTTCGCCCTCAACCGCGAGCAGGGCACGA
CGCTGGTGCTGGTCACGCACGACCGCGCCATCGCCGCGCGCTGCGACCGGCGCATCACCATCGAGGCCGGGCGCCTGGTG
TAG

Protein sequence : 
MSEPFAAAATTTASESPVPPEPIIAVEHVYKSVTDSTGTLEILRDIDFRLAPQETAAIVGASGSGKSTLLSIIAGLDTPT
RGTVLLAGQDLFALDEDERAALRARQVGFVFQSFQLLGNLTALENVMLPLELAGSRDARRRATEMLGRVGLGQRLSHYPK
VLSGGEQQRVALARAFVVEPAVLLADEPTGSLDFATGETIMELMFALNREQGTTLVLVTHDRAIAARCDRRITIEAGRLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-31 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-30 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-30 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide_2543 YP_004127163.1 ABC transporter NC_012469.1.7686878. Protein 7e-40 48
Alide_2543 YP_004127163.1 ABC transporter NC_008702.1.4606598. Protein 5e-29 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alide_2543 YP_004127163.1 ABC transporter VFG2059 Protein 4e-15 44