Gene Information

Name : Daes_3164 (Daes_3164)
Accession : YP_004122902.1
Strain : Desulfovibrio aespoeensis Aspo-2
Genome accession: NC_014844
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein capD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 3423202 - 3425064 bp
Length : 1863 bp
Strand : -
Note : PFAM: polysaccharide biosynthesis protein CapD; KEGG: dsa:Desal_3620 polysaccharide biosynthesis protein CapD

DNA sequence : 
ATGAGGCTGAACCTGCCCAATTTTCGCAACTTCAACTTTTACGCCATGCTCCTGGCGGACCTGGCCATCTTTGCCCTGGC
CCTGCATCTGGCCTATCTTTTCCGTTTCGATTTCGAGGTGCCGCGACCCTTTTCGGCCCAGTACGTGGGGCTGCTCAAGT
ACGTGCTGGTCTTCAAGGGCGCGCTCTTTCTCCTTTTCGGGCTGTATCGCGGCATGTGGCGCTATACCAGCCTCGACGAC
TACTGGAAGCTGCTGCGGGTCACGGCCCTCCAGAGCCTGATCCTCGTATCTTTCGTGGGCTTCCGCTTCTCCTTCATCGG
CGTGCCGCGCTCCATCTTTGTCATCGACTGGGTGCTGACCCTGGTCCTGTGCAGCGGCCTGCGGCTCACGATCCGCGCCT
TCTACACCCGGACCGTGGTCCTGACCGGTTCCGCGCCGGGCAGGAGGAACGTGCTCATGGTCGGCGCTGGCGCGTCTGCC
GAAAAGATCAGCCGCGAACTGACGGCCAACCCGGCCCATTACAACCTCGTGGGCTTCCTGGACGACGACCCCGGCCTCAA
AGGGCGGACCATCCACGGCAGGCCCGTGCTCGGCCAAGTGGAGGTCATGGGCACCGTGGCGGATCGGCTTGGGGTGGACG
AAATCTTCATCGCCGTGTCCGAGGCCTCTGGCGAAGAGATGCGGCGCATGGTGGACATCTGCAAGGATACGGGCGTGCCC
TACAAGATCCTGCCCGCCATGACCGAGATCATCGACGGCAAGGTGGGCATCAAGACCCTGCGTGACATCGATTATCTCGA
CCTGCTGGGCCGCTCGCCCGTGAGCCTCGACACCGAGCGCATCGAGCAGTACCTGACCGGCCAGACCGTGCTGGTCACCG
GGTGCGGCGGGTCCATCGGCTCAGAGCTGTGCCGCCAGATCGTGCGCTTTCGTCCGCGTCACCTCGTGCTGGTCGACGCC
GGGGAGTTCAATCTCTACGAGATCGAGATGGAGCTGCGCAACAGCCTGGGCTTTGCCGACTGCACCACCGTGCTCGGCTC
GGTGGCGGACAGGCCGCTCATGGACCGCACCTTCCAGACCCACAGGCCGTCCACGGTCTTCCACGCTGCGGCCTACAAGC
ACGTGCCCATGCTGGAGCGCAACCCGTGGCAGGCCGTGCGCAACAACATCGAGGGCTCGCGCGCGGTAATGCGGGCCGCC
GTGACCGCCGGGGTGGAGCGGTTCGTGGTCGTGTCCACGGACAAGGCGGTGCGGCCCACCAATGTCATGGGCGCGAGCAA
GCGCGTGACCGAGCTGCTGATGCAGTCCATGTCCGGCCAGGGCACCCGGTTCATGGCCGTGCGTTTTGGCAACGTGGTCG
GCTCCAGCGGCTCGGTGGTCCCGCTGTTTCGGCGGCAGATAGCGGCGGGCGGACCGGTCACCGTGACCCATCCGGACGTG
ACCCGCTACTTCATGAGCATTTCAGAGGCCACCCAGCTCATTCTTCAGGCGGGCAGCATGGGCGAGGCCGGGACCGGCGG
CGAGGTGTTTGTCCTCGACATGGGCGTGCCGGTGCGCATCGCGGACATGGCCCACGACCTTATCCGCCTCTCTGGCAAGG
AACCGGGCGTGGATGTGGAGATCGTGTTCACCGGCCTGCGCGAGGGGGAGAAACTCTTTGAGGAGCTGATCACCGAGGGC
GAGGGCATCGTGCGCACCGAGCACCGCAAGATCCTGGTGGTGGGCAGCGACACCCCGGTCCGTGTCGAGGACCTGGACCG
TGAGATAGCGGCCCTGTCGCGCGCAGCGGACGCCCACGACGGCCAGGCCATCCGCGCCAGCCTCAAGCGGCTCGTGCCGG
AATACACCCCTGAGGGTAACTAG

Protein sequence : 
MRLNLPNFRNFNFYAMLLADLAIFALALHLAYLFRFDFEVPRPFSAQYVGLLKYVLVFKGALFLLFGLYRGMWRYTSLDD
YWKLLRVTALQSLILVSFVGFRFSFIGVPRSIFVIDWVLTLVLCSGLRLTIRAFYTRTVVLTGSAPGRRNVLMVGAGASA
EKISRELTANPAHYNLVGFLDDDPGLKGRTIHGRPVLGQVEVMGTVADRLGVDEIFIAVSEASGEEMRRMVDICKDTGVP
YKILPAMTEIIDGKVGIKTLRDIDYLDLLGRSPVSLDTERIEQYLTGQTVLVTGCGGSIGSELCRQIVRFRPRHLVLVDA
GEFNLYEIEMELRNSLGFADCTTVLGSVADRPLMDRTFQTHRPSTVFHAAAYKHVPMLERNPWQAVRNNIEGSRAVMRAA
VTAGVERFVVVSTDKAVRPTNVMGASKRVTELLMQSMSGQGTRFMAVRFGNVVGSSGSVVPLFRRQIAAGGPVTVTHPDV
TRYFMSISEATQLILQAGSMGEAGTGGEVFVLDMGVPVRIADMAHDLIRLSGKEPGVDVEIVFTGLREGEKLFEELITEG
EGIVRTEHRKILVVGSDTPVRVEDLDREIAALSRAADAHDGQAIRASLKRLVPEYTPEGN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 2e-76 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daes_3164 YP_004122902.1 polysaccharide biosynthesis protein capD VFG1300 Protein 2e-79 42
Daes_3164 YP_004122902.1 polysaccharide biosynthesis protein capD VFG0029 Protein 7e-77 41