Gene Information

Name : Daes_2015 (Daes_2015)
Accession : YP_004121769.1
Strain : Desulfovibrio aespoeensis Aspo-2
Genome accession: NC_014844
Putative virulence/resistance : Virulence
Product : FliI/YscN family ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2215039 - 2216466 bp
Length : 1428 bp
Strand : +
Note : TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; KEGG: dsa:Desal_1150 ATPase, FliI/YscN family; SMART: AAA ATPase

DNA sequence :
GTGGCGTCGAACTCGCGACTGGGACTGCTCGAAAGCCTGGACCCCTGCCAGACCTTCGGCAAGGTGACCAAGGTCGTGGG
CCTCATCGCCGAGGGCCACGGCATCCGGGCTCCGCTTGGCTCGGTCTGCTATCTCATCCCGGAGGAAAGCCCGCCCATAG
CAGCCGAAGTGGTCGGCTTTCGCGACGGCGCCTGCCTGTTCATGCCCTATTCCGACATGCGCGGCATCGGGCCGGGCAAC
CTCATCCAGAACGCGGCCACCCCGCCCCACATGCCCGTTGCCAAGGCCATGCTCGGACGAGCCCTGGACTGTTTCGGCAC
GCCCATGGACGGCAAGGGGCCGATCACGCCGGACGCCTTCGTGCCCCTGCACCGGGAGCCGCCCAACCCCCTGGAACGGC
CACGCATCAACGAGCCGCTCGACGTGGGCATCCGCTCGGTCAACGCCCTGCTCACCCTGGGCAAGGGCCAGCGCGTGGGC
ATCATGGCCGGTTCGGGCGTGGGCAAATCCACGACGCTGGGCATGATGGCCCGCTACACCAAGGCGGACATCAACGTCAT
CGCCCTGGTGGGCGAGCGCGGCAGGGAGGTGGTGGAATTCATGGAGCGCGATCTCGGCCCCGAGGGCATGGCGCGCAGCG
TACTGGTGGTCGCCACCTCGGACAAGAGCCCGCTCATCCGCATGCGCGCGGCCTATGCGGCCACAGCCGTGGCAGAATAC
TTCCGCGATCAGGGCAAGGATGTGCTGCTGATGATGGACTCGGTCACCCGGTTCGCCATGGCCGGTCGCGAGGTGGGTCT
GGCCGCTGGCGAGCCGCCCACGCGCGGCGGCTACACCCCGAGCGTCTTCGCCCACCTGCCCCAGCTCCTGGAGCGCGCGG
GCAAGAGCGCCAAAGGCTCCATCACCGGCATCTACACCGTGCTCGTGGACGGCGACGACTTTACCGAGCCCATTGCCGAC
TCGACCCGCTCCATCCTCGACGGCCACATCGTACTCACCCGCGAACTGGCCGACCTCGGCCATTACCCGGCCATCGACGT
GCTCCGGTCCGTCAGCCGTCTGCGAGGCGACATCACCACAAATCAGGCCCAGGCAGACGGCCAGGCCTTGCTGCGGCACA
TGGCCACCTTCAAGCGGGTGGAAGACATGGTCAACATCGGCGCCTACCAGAAAGGCGCCAACGTCGAGGTGGACAAGGCC
ATTGCCATGGTCGCACCCATCAATGGATTTCTCCGGCAGTTGGTGACGGAACGGGAGCCGCTCGACTCCGCTTTCGCCAA
ACTGCACGGGCTGGTCGCCGGCAACGATCCGCAGCCACAGGCCCAGCCAAAGCAGAACGCCCCGCAGCCACAGGCCCGGC
CGCCCAAGCCCCCGCCGCTCAAGCGGGTGCCACCGCCCCCCTCGTCCATTCCTGTGAGAAGAAAATAG

Protein sequence :
MASNSRLGLLESLDPCQTFGKVTKVVGLIAEGHGIRAPLGSVCYLIPEESPPIAAEVVGFRDGACLFMPYSDMRGIGPGN
LIQNAATPPHMPVAKAMLGRALDCFGTPMDGKGPITPDAFVPLHREPPNPLERPRINEPLDVGIRSVNALLTLGKGQRVG
IMAGSGVGKSTTLGMMARYTKADINVIALVGERGREVVEFMERDLGPEGMARSVLVVATSDKSPLIRMRAAYAATAVAEY
FRDQGKDVLLMMDSVTRFAMAGREVGLAAGEPPTRGGYTPSVFAHLPQLLERAGKSAKGSITGIYTVLVDGDDFTEPIAD
STRSILDGHIVLTRELADLGHYPAIDVLRSVSRLRGDITTNQAQADGQALLRHMATFKRVEDMVNIGAYQKGANVEVDKA
IAMVAPINGFLRQLVTEREPLDSAFAKLHGLVAGNDPQPQAQPKQNAPQPQARPPKPPPLKRVPPPPSSIPVRRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-93 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-88 48
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 1e-88 48
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 1e-88 48
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 5e-89 48
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-88 48
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-88 48
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-89 48
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-89 48
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-73 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-73 48
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-88 47
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 3e-70 46
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 7e-78 46
escN AAK26715.1 EscN Virulence LEE Protein 1e-77 45
escN NP_290268.1 hypothetical protein Virulence LEE Protein 3e-78 45
escN AAL57542.1 EscN Virulence LEE Protein 1e-77 45
ECs4568 NP_312595.1 EscN Virulence LEE Protein 3e-78 45
escN CAC81862.1 EscN protein Virulence LEE II Protein 4e-78 45
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-78 45
escN AAC38383.1 EscN Virulence LEE Protein 3e-78 45
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-78 45
escN AAC31513.1 L0034 Virulence LEE Protein 2e-78 45
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-78 45
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-78 45
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 5e-78 45
unnamed AAL06369.1 EscN Virulence LEE Protein 9e-76 45
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 5e-75 45
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-75 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 5e-75 45
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 2e-75 45
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 8e-76 45
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 6e-69 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 5e-70 44
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-75 43
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 7e-76 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 3e-76 43
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 1e-72 43
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 9e-71 43
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 8e-71 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 6e-62 41
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 8e-79 41
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 1e-66 41
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 1e-66 41
invC AAS66861.1 InvC Not tested SSR-2 Protein 5e-57 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG0390 Protein 5e-91 51
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG2144 Protein 1e-89 50
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG0192 Protein 4e-92 49
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG0048 Protein 4e-90 49
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG2331 Protein 1e-84 49
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG1254 Protein 5e-92 48
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG2499 Protein 2e-87 47
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG0812 Protein 1e-78 45
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG0730 Protein 2e-78 45
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG0515 Protein 9e-76 45
Daes_2015 YP_004121769.1 FliI/YscN family ATPase VFG1778 Protein 5e-60 41