Gene Information

Name : Pat9b_4061 (Pat9b_4061)
Accession : YP_004119597.1
Strain :
Genome accession: NC_014842
Putative virulence/resistance : Virulence
Product : Lytic transglycosylase catalytic
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 56445 - 56978 bp
Length : 534 bp
Strand : -
Note : PFAM: Lytic transglycosylase catalytic; KEGG: ent:Ent638_4280 lytic transglycosylase, catalytic

DNA sequence : 
ATGAAATGGTTTGCTGTTCTCGGGCTCGCCGCTGTATTCAGCGTGCAGGCCGAACCGGAAATGTGCTTCACGAAAGCCGG
AAAGGATTTCGGTATTGATCCGCGCCTGCTGATGGCACACTCCATTCAGGAATCACGCATGCGTAATAATGCGCTGAATA
CCAAAAGTAGCGGGGGAACGCATGACGTCTGCAACATGCAGATCAACAGTTCTCATTTCAGTCAGCTGAAAAAGTTTGAT
ATTACGCGGGAAAGGCTGCTGAAAGATCCGTGCATCTGCATTTATACCGGCGCATGGATCGAGGCGCGCAACTTCAGACA
GTACGGCAGAAACTGGGACAGCGTCGGAATGTATAATACCGGACCCAGCCCGAAGCTGATAAAACAGCGTCGGGAGTATG
CAGCAATAATTAAAAGTATCTATCGCGTGCTGATCGCCCGCGATGAGGTTTATGTTGCCATGACACAGAAGAATAAAAAA
ACGCCTGCGCCGGAAACCTTTATCAGCGCAGACGTTGACACCCCCATAAAATAA

Protein sequence : 
MKWFAVLGLAAVFSVQAEPEMCFTKAGKDFGIDPRLLMAHSIQESRMRNNALNTKSSGGTHDVCNMQINSSHFSQLKKFD
ITRERLLKDPCICIYTGAWIEARNFRQYGRNWDSVGMYNTGPSPKLIKQRREYAAIIKSIYRVLIARDEVYVAMTQKNKK
TPAPETFISADVDTPIK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 2e-16 41
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 2e-16 41
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 2e-16 41
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 2e-16 41
etgA AFO66324.1 putative lytic transglycosylase Not tested SESS LEE Protein 3e-20 41
etgA AFO66404.1 putative lytic transglycosylase Not tested SESS LEE Protein 3e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4061 YP_004119597.1 Lytic transglycosylase catalytic VFG0539 Protein 5e-17 41