Gene Information

Name : Pat9b_4123 (Pat9b_4123)
Accession : YP_004119654.1
Strain :
Genome accession: NC_014842
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 114163 - 115734 bp
Length : 1572 bp
Strand : -
Note : PFAM: transposase IS66; KEGG: eoj:ECO26_5473 hypothetical protein

DNA sequence :
ATGGACATCTCACACCCTGATGAAAATGCCCGGATCAGGGCGCTGCTGCAGGAGCAGCAAACCACCATCCGCAAAATGGC
GGAGTATAACCGTCTGCTCTCGCAGCGGGTGGCGGCGTACGCCAGCGAAATCAGCCGGCTGAAGGCGCTGGTCGCTAAGC
TGCAGCGCATGCAGTTCGGCAAAAGCTCCGAAAAGCTGCGTGAGAAAACGCAGCGCCAGGTGCGCGAGGCTGAGGAGCGC
ATCGATGCCCTGCAGGAGGAGATGGCCGAGGTGCTGGGCGAGCAGAATGACCCGGTACTGCCACAGCCGCTGCGCCAGTC
TTCCGCCCGTAAACCGCTCCCCATCACACTCCCGCGCGAAACCCGCACGCTGTTGCCGGCAGAAATCACCTGCCCGGCAT
GCGGCGGAGAACTCAGCGCGTTGGGCTGCGACATGTCAGAGCAACTGGAGCTCATCAACAGCGCCTTTAAGGTTATCGAA
ACGCAGCGGCCCAAACTGGCCTGCCGCAGCTGTGACCACATCGTTCAGGCCCCCACGCCTTCAAATCCCATAGAGCGCAG
CTACGCCGGTTCCGGTCTGCTGGCCCGAATCGTCACCGCGAAGTTCGCAGAGCACACACCACACTACCGGCAGTCAGAAA
TCTACCGTCGTCAGGGCGTGGAGCTGAGTCGTGCCACGCTGGGGCGCTGGTCCGGCGCGGTCAGCGAACTGCTGGAGCCA
CTGTATGAGCTGCTGCGTCAGTACGTGCTGATGCCGGGCAAGGTGCATACTGACGATATCCCGGTGCCGGTGCAGGAACC
GGGCAGCGGCAAAACCCGGACGGCCCGGCTGTGGGTGTACGTGCGGGATGACCGCAACGCGGGTTCACAGCTTCCGCCTG
CGGTCTGGTTCGCGTACTCACCGGACCGTAAGGGAATGCATCCGCAGCAACACCTTGCCGGGTACAGCGGTATCCTGCAG
GCGGATGCTTACGGTGGCTATAATGCCCTGTACGAAGACGGGCGCATCACGGAAGCGGCCTGCATGGCGCACGCCCGTCG
GAAAATCCACGACGTCCACGTCCGAACCCCGACCGACATCACAACAGAAGCGCTGAAGCGAATCGGTGAGCTGTATGCCA
TCGAGGCAGATATACGCGGCAGTCCGGCAGAGAAACGACTGGCGGTCCGGAAAGTGCGGACCGTCCCGCTTATGCTATCG
CTGTATGACTGGATACAGGGGCAGATGATAGTGCTGTCGCGCCACTCGGATACGGCGAAGGCGTTCGCGTACCTGCTGAA
GCAGTGGGACGCGCTGAACCTGTACTGCAGCAACGGCTGGGCAGAGATAGACAACAACATCGCGGAGAACGCGCTGCGTG
GTGTAGCCCTGGGCCGGAAAAACTGGCTGTTCGCCGGTTCAGACGCGGGCGGGGAAAGCGCGGCTGTTCTGTACTCGCTG
ATCGGCACCTGCCGGCTTAACGGCGTTGAACCCGAGGCGTGGCTGCGTTACGTCATCGGTCATATCCAGGACTGGCCGGT
GAACCGGGTCCGCGATCTGCTGCCATGGAAGGTAGACCTTACTTCTGCTTGA

Protein sequence :
MDISHPDENARIRALLQEQQTTIRKMAEYNRLLSQRVAAYASEISRLKALVAKLQRMQFGKSSEKLREKTQRQVREAEER
IDALQEEMAEVLGEQNDPVLPQPLRQSSARKPLPITLPRETRTLLPAEITCPACGGELSALGCDMSEQLELINSAFKVIE
TQRPKLACRSCDHIVQAPTPSNPIERSYAGSGLLARIVTAKFAEHTPHYRQSEIYRRQGVELSRATLGRWSGAVSELLEP
LYELLRQYVLMPGKVHTDDIPVPVQEPGSGKTRTARLWVYVRDDRNAGSQLPPAVWFAYSPDRKGMHPQQHLAGYSGILQ
ADAYGGYNALYEDGRITEAACMAHARRKIHDVHVRTPTDITTEALKRIGELYAIEADIRGSPAEKRLAVRKVRTVPLMLS
LYDWIQGQMIVLSRHSDTAKAFAYLLKQWDALNLYCSNGWAEIDNNIAENALRGVALGRKNWLFAGSDAGGESAAVLYSL
IGTCRLNGVEPEAWLRYVIGHIQDWPVNRVRDLLPWKVDLTSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 0.0 85
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 1e-120 69
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 8e-149 65
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 5e-149 65
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 1e-138 63
tnp AEA34686.1 transposase Not tested Not named Protein 5e-144 62
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 6e-143 61
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 4e-143 61
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 4e-143 61
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 5e-143 61
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 9e-144 61
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 3e-143 61
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 9e-144 61
unnamed AAC31494.1 L0015 Not tested LEE Protein 3e-143 61
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 7e-143 61
unnamed AAL57570.1 unknown Not tested LEE Protein 3e-143 61
unnamed AAL08460.1 unknown Not tested SRL Protein 3e-102 59
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 1e-123 56
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 1e-123 56
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 1e-123 56
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 1e-131 54
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 9e-81 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4123 YP_004119654.1 transposase IS66 VFG1700 Protein 5e-121 69
Pat9b_4123 YP_004119654.1 transposase IS66 VFG0793 Protein 2e-143 61
Pat9b_4123 YP_004119654.1 transposase IS66 VFG1051 Protein 1e-102 59
Pat9b_4123 YP_004119654.1 transposase IS66 VFG1736 Protein 3e-103 55