Gene Information

Name : Pat9b_4375 (Pat9b_4375)
Accession : YP_004119493.1
Strain :
Genome accession: NC_014841
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 269206 - 269535 bp
Length : 330 bp
Strand : +
Note : KEGG: ddc:Dd586_2861 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain

DNA sequence : 
TTGCCTCGCAGAGAACAAATCATCGAAGATCTGACGCACTGGATTGACCTGAATTTGCATGCCGTACATAGCATCGAGGA
CGTTGCCGCTCGTTCAGGCTATTCCAGATGGCATATCCAGCATATGTTCAAGCAAGTCAATCGTGTCTCGATCCTGGCTT
ATGTCCGCCAGCGTCGTCTTGAAAGGGCTGCCAAAGATCTCACAGAAGGCCAGGAGAGTATTTCTGCCATCGCTTTACGG
CACGGTTTTGGTTCGCAGCAGGCCTTCAGCAGAGCGTTTATAAAATGGCAGAAGATGAAGCCATCAACCTTTCGCTCCTG
CGCAAGGTAA

Protein sequence : 
MPRREQIIEDLTHWIDLNLHAVHSIEDVAARSGYSRWHIQHMFKQVNRVSILAYVRQRRLERAAKDLTEGQESISAIALR
HGFGSQQAFSRAFIKWQKMKPSTFRSCAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 4e-15 42
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 3e-16 41
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 3e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 1e-15 43
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 1e-15 42
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator BAC0371 Protein 9e-16 42
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 9e-16 42
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 4e-15 42
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 2e-15 41
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 1e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator VFG0585 Protein 1e-15 42
Pat9b_4375 YP_004119493.1 AraC family transcriptional regulator VFG1038 Protein 1e-16 41