Gene Information

Name : Pat9b_4372 (Pat9b_4372)
Accession : YP_004119490.1
Strain :
Genome accession: NC_014841
Putative virulence/resistance : Unknown
Product : transposase Tn3 family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4644
EC number : -
Position : 264150 - 267245 bp
Length : 3096 bp
Strand : +
Note : PFAM: transposase Tn3 family protein; KEGG: sbl:Sbal_2174 transposase Tn3 family protein

DNA sequence :
ATGCCACGGCGACAGATACTGAGCAGTGAAGAGCAGGATCGCTTACTTGTTATACCAGATGAGGAAATTATTCTGACCCG
AATGTGTTTTCTGAATGAACAGGATATTGCACTCATTAATAAGCACCGTCGGCCAGCTAATCGCCTGGGTTTTGCGGTAT
TACTCTGTTACCTGCGCGGGCCAGGATTTAGTCCTGACAAAAGTAATTTCCCTCACAGTGGCGTCGTATCCAGAGTCGCT
TCCCGACTGAAAATACAGCCTGATTTATGGCATGAATATGCATCCAGAGAGCAAACCCGCTGGGAACACCTGTCCGAACT
TTATCGCTACCTTAAATTATCTCCATTCAGCCGGACACTGCAAAAAGGCTGTATCCGGCATCTGCACCCTTATGCGATGC
GAACTGACAAAGGGTTTATGCTGGCGGAAGAAATGCTCAGTTGGCTGCATAACAATAATGTTATTTTCCCTTCTGTTGAT
GTGATCGAACGGACGCTTGCCGAAGTCGTCACGCTCGCTGACAGAGCCGTATTTTCGGCACTTGTCGCGCAACTGGAAAC
GCAGCATAAATCAGCTCTCGATAGCCTGCTCATATCAGAGGGTGAACAACCTACCCGACTCGCTTGGCTACTTCAGCCTC
CGGGTAAAATCAACGGTAAAAATGTGCTGCAACATATCGATCGGCTTAATTCTATCGCCGCACTGGGATTGCCTGATGGT
ATTGCGCTTTCCGTTCACCAGAACAGGTTGCTCAAACTGGCACGTGAGGGCCGGAAAATGAGCAGTAGAGATCTGGCAAA
ATTTACCGATGTCAGGCGTTACGCTACGCTGGTTTGTGTCATTCAGGAAGCTCGGGCCACACTGACTGACGAAGTTATAG
AACTGCACGAACGTATTCTGGGTAGCCTGTTCAGCCGCGCAAAACGCACACAGGCCGAACGGCTCCAGCAAACGGGAAAG
CTAATTCAGAGTAAGCTGAAGCAGTATGCTTCCGTCGGGCAGGCATTGCTTAACGCCAGAGAATCCGGTGAAGATCCCTG
GCTCGCAATAGAAGACGTCCTTCCCTGGCAGGAGTTCATCAGCAGCGTGGAAGAAACGCGATTTTTGTCCCGTAAAGGCA
ATTTTGACCCGCTTCACCTGATCACCGAAAAATACAGTACGCTTCGAAAATATGCCCCGCGAATGTTGTCAGTATTACAG
TTCGTGGCGGCACCTGCGGCGCAAGCGCTTAGCGATGCTCTTGAGACTACAAGGGAAATCTACCGTAAGCAGCTCCGTAA
AGTTCCGCCCGAAGCGCCAATAGGTTTTATCCCTGAAAGCTGGCGGAAACTGGTGCTCACGCCTTCAGGTATCGACCGCA
AGTATTATGAGTTTTGCGTACTGAATGAGCTTAAGGGAGCGTTACGTTCCGGTGATATCTGGGTAAAAGGCTCGCGACGA
TACAGAAATTTTGATGATTATCTCATCCCGGTCACTGAGTTTGAGAAATCCCGACATAATGACCAGTTACAGCTGGCCGT
TCAGACCGATTGCCAGGCATATATTCAGACCCGTATGACACTTCTCGCATCGCGTCTGGAAGAAGTTAACGCGATGGCTC
TTGCTGGTGATTTGCCAGATGTTGATATCTCAGATAAAGGTGTGAAAATCACTCCGCTGGAGAACAGCGTTCCTTCAGGT
GTTTCACCCTTTGCCGATTTGGTTTATGGCATGCTCCCCCATCCGAAAATTACGGAGATACTGGAAGAAGTAGACAGCTG
GACGGGTTTTACACGTCACTTCGCACATCTCAAAAATAATAACGTCAGGCCAAAAGACGGAAGGCTGTTGCTGACCACCA
TTCTGGCCGACGGCATCAATCTGGGGCTGACAAAAATGGCAGAGTCCTGCCCTGGTGCAACAAAATCGTCACTCGAAGGC
ATTCAGGCATGGTACATCCGTGATGAAACCTATTCAGCGGCGCTGGCTGAGCTGGTCAACGCCCAGAAAGCCCGACCTCT
GGCCGCATTCTGGGGCGACGGGAAAACATCGTCGTCAGACGGGCAGAACTTTCGGGTTGGCAGTCATGGGCGTTATGCAG
GCCAGGTCAATCTTAAATATGGGCAGGAGCCGGGCGTGCAGATTTATACGCACATCTCAGACCAATATAGTCCGTTCTAC
GCCAAAGTGATCAGTCGGGTGCGCGACTCAACCCACGTGCTTGATGGTCTGCTGTACCATGAAAGCGAGCTGGAAATTAC
CGAGCATTACACCGATACAGCAGGATTCACTGAGCATGTTTTCGCCCTGATGCATCTGCTGGGCTTCGCTTTTGCGCCAA
GGATCCGTGACCTTCATGATAAGAGGCTGTTTATTCATGGAAAGGTCGAGCGGTATCCGGGGCTTCAGTCCGTCATATCA
ACTACCAGCCTGAATATCAAAGACATTGAGGCTCACTGGGATGAGGTATTGCGCCTGGCAGCTTCGATTAAACAAGGGAC
TGTCACCGCATCGCTGATGATAAAAAAGTTAGCCAGTTATCCAAAACAGAATGGACTTGCCAAAGCACTGAGAGAAATTG
GCCGCATCGAGCGGACATTGTTTATGCTGGACTGGTTCCGTGATCCTGGCCTGCGACGACGCGTACAGGCTGGGCTGAAT
AGGGGTGAGGCCCGTAATGCTCTTGCGCGAGCGGTATTCATGCACCGGCTGGGTGAAATCAGGGATCGTGGGCTGGAGAA
TCAGAGTTATCGCGCCAGTGGGCTGACGTTACTGACAGCGGAGATTACGTCTGGCGTAATAATCTTAAACTGGGGGCCGG
AAAATACCGGTCATTACGCACTGTTGATACTGAATTGTACAAAAAGCAGTCTTAGCGTGGGATATTTTCCGTTTTCCATG
CGGACCCCTAAACGTACAATAATTTCCGATATCCAAACGGATCCTTCGTGCATATTAGTTACATCATACATTTGCTTCAA
AAAAACCACATCGGCCTGCGGCCCAACACCAGTCAAGCAACAATACCGGCGAGTTTCAGGTTGCTCCTCTACCCAGCCTG
TGAGGCATGATGGCGAAGTGATTTTGAGCAAGCACCCTTTTGTTTGTTGTAACTAA

Protein sequence :
MPRRQILSSEEQDRLLVIPDEEIILTRMCFLNEQDIALINKHRRPANRLGFAVLLCYLRGPGFSPDKSNFPHSGVVSRVA
SRLKIQPDLWHEYASREQTRWEHLSELYRYLKLSPFSRTLQKGCIRHLHPYAMRTDKGFMLAEEMLSWLHNNNVIFPSVD
VIERTLAEVVTLADRAVFSALVAQLETQHKSALDSLLISEGEQPTRLAWLLQPPGKINGKNVLQHIDRLNSIAALGLPDG
IALSVHQNRLLKLAREGRKMSSRDLAKFTDVRRYATLVCVIQEARATLTDEVIELHERILGSLFSRAKRTQAERLQQTGK
LIQSKLKQYASVGQALLNARESGEDPWLAIEDVLPWQEFISSVEETRFLSRKGNFDPLHLITEKYSTLRKYAPRMLSVLQ
FVAAPAAQALSDALETTREIYRKQLRKVPPEAPIGFIPESWRKLVLTPSGIDRKYYEFCVLNELKGALRSGDIWVKGSRR
YRNFDDYLIPVTEFEKSRHNDQLQLAVQTDCQAYIQTRMTLLASRLEEVNAMALAGDLPDVDISDKGVKITPLENSVPSG
VSPFADLVYGMLPHPKITEILEEVDSWTGFTRHFAHLKNNNVRPKDGRLLLTTILADGINLGLTKMAESCPGATKSSLEG
IQAWYIRDETYSAALAELVNAQKARPLAAFWGDGKTSSSDGQNFRVGSHGRYAGQVNLKYGQEPGVQIYTHISDQYSPFY
AKVISRVRDSTHVLDGLLYHESELEITEHYTDTAGFTEHVFALMHLLGFAFAPRIRDLHDKRLFIHGKVERYPGLQSVIS
TTSLNIKDIEAHWDEVLRLAASIKQGTVTASLMIKKLASYPKQNGLAKALREIGRIERTLFMLDWFRDPGLRRRVQAGLN
RGEARNALARAVFMHRLGEIRDRGLENQSYRASGLTLLTAEITSGVIILNWGPENTGHYALLILNCTKSSLSVGYFPFSM
RTPKRTIISDIQTDPSCILVTSYICFKKTTSACGPTPVKQQYRRVSGCSSTQPVRHDGEVILSKHPFVCCN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA ACF06153.1 transposase Not tested Tn5036-like Protein 0.0 57
EC042_4089 YP_006098372.1 transposase Not tested Tn2411 Protein 0.0 56
tnpA AAL08440.1 transposase TnpA Not tested SRL Protein 0.0 55
EXA24 ABD94633.1 truncated Tn1721 tranposase Not tested ExoU island A Protein 0.0 53
tnpA ACY75538.1 TnpA Not tested Tn6060 Protein 0.0 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4372 YP_004119490.1 transposase Tn3 family protein VFG1031 Protein 0.0 55