Gene Information

Name : Pat9b_4234 (Pat9b_4234)
Accession : YP_004119354.1
Strain :
Genome accession: NC_014841
Putative virulence/resistance : Virulence
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 110366 - 110716 bp
Length : 351 bp
Strand : -
Note : KEGG: ddc:Dd586_2861 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain

DNA sequence :

ATGGATCGACACGAAATTATCATCCATGACTTAATTGCATGGATTGATGAAAACATTCGCCGCCCCCTTAAGATAGAAGA
AGTTGCTCAGCGGTCCGGTTATTCAAAATGGCATCTGCAAAGGATGTTCCAGCGCATCATGAATATCAGCTTAGGAAACT
ATATTCGGGATAAAAAGCTGGAAATGGCCGCGCATGATTTAATCGAAAGTCGTGAGACGGTCATTGATATTTCCGTTAAA
TATGGTTACGACTCCCAGCAGTCATTTACCCGCTCTTTTGCCAGAAAATACCATGTGCCCCCCGCGACGTGGCGGCGTTT
AAAAACACATCATTTAACGTTTCTGGTTTAA

Protein sequence :

MDRHEIIIHDLIAWIDENIRRPLKIEEVAQRSGYSKWHLQRMFQRIMNISLGNYIRDKKLEMAAHDLIESRETVIDISVK
YGYDSQQSFTRSFARKYHVPPATWRRLKTHHLTFLV

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
soxS	YP_219131.1	DNA-binding transcriptional regulator SoxS	Not tested	SPI-4	Protein	1e-21	47

• Homologs from CARD and BacMet (resistance genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	NC_002695.1.914293.p	Protein	7e-23	49
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	BAC0371	Protein	7e-23	49
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP001138.1.gene612.p	Protein	6e-27	49
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP000034.1.gene4505.	Protein	1e-22	48
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP001918.1.gene327.p	Protein	2e-23	48
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP000647.1.gene4499.	Protein	4e-23	48
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP001138.1.gene4488.	Protein	4e-22	47
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP001918.1.gene2033.	Protein	3e-23	47
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP000647.1.gene1624.	Protein	2e-23	46
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	BAC0560	Protein	4e-23	46
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	NC_002695.1.917339.p	Protein	4e-23	46
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP000034.1.gene1596.	Protein	3e-23	46
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	CP001138.1.gene1637.	Protein	5e-23	45

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Pat9b_4234	YP_004119354.1	AraC family transcriptional regulator	VFG0585	Protein	4e-22	47