Gene Information

Name : Pat9b_4502 (Pat9b_4502)
Accession : YP_004119032.1
Strain :
Genome accession: NC_014840
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 90360 - 91052 bp
Length : 693 bp
Strand : +
Note : TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: yen:YE3024 transcriptional activator; SMART: response regulator receiver

DNA sequence :
ATGCGCCTGTTGTTAGTCGAGGATGAAGAAAAAACCTCAACCTATCTTCGTCGTGCTTTGGGCGAGTCCGGGTTCACGGT
GGACGTTTCAGCGAATGGCGCTGAGGGGCTGCATTTCGCACTGGAGTTCGACTACGACGCGATCATCCTTGATGTGATGC
TGCCCGGAATGGATGGCTATCGGGTACTGGAAGGGGTGCGATCCAGCAAGCAGACACCGGTGTTGATGTTATCTGCTCGC
GGATCGGTGGATGAACGCGTCAAAGGACTGCGGCTGGGTGCAGATGATTATCTCCCTAAACCGTTCTCGCTTATTGAGTT
GGTCGCGCGCATTCAGGCGCTGGTTCGTCGCCGTTCTGCGGATGGCACGGATATCACGCAACTGCAAATTCACGATTTAC
AGGTAGATCTGCTGTCCAGACGGGTATTCCGTTTGGGAACCCGACTGGACCTCACCGCGAAAGAGTTTGCCTTGCTGAGC
CTGCTGGCGCGCCATCAGGGCGAAATTTTGTCGAAGATGATGATCGCGGAACAGGTATGGGATATGAATTTTGACAGCGA
CGCCAACGTGGTTGAGGTCGCGATTAAACGTTTACGTGCCAAAGTCGATACGCCATTTGCCGTCAGGCTACTGCATACCG
TGCGGGGTATGGGATATGTGCTTGAAGTCAGGCCCGGAGATCAGCATGTTTAA

Protein sequence :
MRLLLVEDEEKTSTYLRRALGESGFTVDVSANGAEGLHFALEFDYDAIILDVMLPGMDGYRVLEGVRSSKQTPVLMLSAR
GSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRSADGTDITQLQIHDLQVDLLSRRVFRLGTRLDLTAKEFALLS
LLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAIKRLRAKVDTPFAVRLLHTVRGMGYVLEVRPGDQHV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-53 50
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-52 49

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family BAC0083 Protein 6e-61 61
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family BAC0125 Protein 9e-64 58
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family BAC0638 Protein 1e-55 58
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family BAC0197 Protein 8e-60 57
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family BAC0111 Protein 6e-60 55
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family BAC0308 Protein 2e-53 50
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family BAC0347 Protein 6e-52 49
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family CP001918.1.gene5135. Protein 1e-21 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family VFG0596 Protein 4e-54 50
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family VFG1389 Protein 1e-38 48
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family VFG1390 Protein 2e-38 43
Pat9b_4502 YP_004119032.1 two component transcriptional regulator, winged helix family VFG1386 Protein 9e-36 43