Gene Information

Name : Pat9b_4943 (Pat9b_4943)
Accession : YP_004118799.1
Strain :
Genome accession: NC_014839
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 213627 - 214400 bp
Length : 774 bp
Strand : -
Note : KEGG: cko:CKO_03838 iron-dicitrate transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGCAACTGAAGGTTGAGAATCTGACGGCGGGTTATGCGGGGAAACGCGTGCTGCAGGATGTCAGTATCCATTTTGCGCC
AGGAGAGATCACCGCGCTGCTCGGACCGAATGGCTGTGGTAAGTCGACATTACTTAAAGCGCTGGCACGTTTGCTGGTAC
CCAGCCAGGGAGAGGTGTGGCTGGCGCAACAACCGCTGGCGCGTTTCTCTTCACGGCAGCTGGCGCAGCACCTGGCGCTG
TTGCCGCAGCAACATCTGACGCCGGAAGGGGTCAGCGTGGCGGAGTTGGTGGCTTATGGTCGCCATCCGTGGTTACCGCT
GTGGGGGCGCTTATCGGCACAGGATCGGGAACAGGTGCAGTCCGCGATGGTCCGTATGGGCGTGGCGCATCTGGCGCAGC
AACGCGTCAGTGATCTCTCCGGTGGCCAGCGGCAGCGCGTGTTTCTGGCGATGCTTGTGGCGCAGGATACGCCGCTTATT
CTGCTGGATGAACCCACCACCTGGCTGGATATCAATCACCAGATTGAACTGATGAAACTGATGGGCGAGTTTAAGGCGCA
GGGGAAAACGGTGGTAACGGTGCTGCACGACCTTAATCAGGCCAGTCGCTACTGCGACCAACTGGTGCTGCTGGCACAAG
GCGCAGTGATCACCCAGGGAACCCCGGCCCAGGTGCTGCAACCGGACGTCCTAAAGCGGGTATTTCAGGTTGATGTGGCG
GTGGTGCGCGAGCCGCTGAGTGGCGCATTGATGTGCGTGCATCATGATGGTTAG

Protein sequence : 
MQLKVENLTAGYAGKRVLQDVSIHFAPGEITALLGPNGCGKSTLLKALARLLVPSQGEVWLAQQPLARFSSRQLAQHLAL
LPQQHLTPEGVSVAELVAYGRHPWLPLWGRLSAQDREQVQSAMVRMGVAHLAQQRVSDLSGGQRQRVFLAMLVAQDTPLI
LLDEPTTWLDINHQIELMKLMGEFKAQGKTVVTVLHDLNQASRYCDQLVLLAQGAVITQGTPAQVLQPDVLKRVFQVDVA
VVREPLSGALMCVHHDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-73 61
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-45 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 5e-44 45
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-44 45
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 5e-44 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 5e-44 45
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-44 41
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-44 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4943 YP_004118799.1 ABC transporter-like protein BAC0164 Protein 1e-73 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_4943 YP_004118799.1 ABC transporter-like protein VFG1042 Protein 9e-74 61
Pat9b_4943 YP_004118799.1 ABC transporter-like protein VFG0925 Protein 3e-52 44