Gene Information

Name : Pat9b_5326 (Pat9b_5326)
Accession : YP_004118039.1
Strain :
Genome accession: NC_014838
Putative virulence/resistance : Unknown
Product : ABC transporter-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG1123
EC number : -
Position : 196275 - 198047 bp
Length : 1773 bp
Strand : -
Note : KEGG: ara:Arad_8658 peptide ABC transporter; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase

DNA sequence :
ATGAGCGTGTTGCGCGTTGAGAACCTGACGGTGGCGTTCCGCAGTGACCAGCAGTGGCGCGAAGTGGTTAAAGACGTCTC
CTTTGACATTCAGGCCGGTGAAACGCTGGCTATCGTCGGTGAATCGGGTTCCGGGAAAAGTGTCACCTCGATGGCGATCA
TGCGGCTGTTAAATGCTCGCCACACACGAATTAGCGGCAAAGTGCTGCTCAATGGGGTGGACTTACTCGGTTTAAGCGAA
GCCGCGATGCGCGACGTGCGTGGCAACGCCGTCGCGATGATTTTTCAGGAGCCGATGACCAGCCTGAATCCGTCATTTAC
CATCGGCCACCAGATCGCTGAAGCGCTGATCACCCATCGTAAAATCTCGAAACGCGCCGCACGCGAAGAAACCGTCCGTT
TGCTGGAAAAGGTGCGTATCCCTAACGCGGCTAAACGTTTTGATGACTACCCACACCATTTTTCCGGCGGTATGCGTCAG
CGAGTGATGATCGCCATGGCGCTGGCGTTACGTCCCAGGCTGTTGATTGCGGATGAACCCACCACCGCGTTGGATGTCAC
CATCCAGGGGCAAATTCTCGACCTGATCAAAACCTTGCAGGAAGAAGAAGGCACCGCCGTGTTGTTTATCACCCACGATA
TGGGGGTGGTGGCCGAGGTGGCTGACCGAACACTGGTGATGTATCAGGGGGAGAAGGTGGAAAGCGGCACCACCGCCGAA
ATTTTTTCTGCCCCGGCAAAGGCCTACACCCGCACCCTGATCGCTACCGTGCCGCAGCTTGGGGCGATGCGTGGTCTCGA
CGGGCCGCGTAAGTTTGCTGACGAGGCAACCGTCGCCTATACCCTGCCTTCACCTGGCAGCCAACCGCTGCTGGCGGTCA
AAAATCTCAGCACACGTTTTAATATTCACGAGGGGTTGTTGAGCCGTAAAACCGGGGCGGTGCACGCGGTAGAAAATATC
TCCTTCGAGTTGTTGCCGGGAGAGACGTTGTCGCTGGTCGGCGAATCCGGCTGTGGCAAATCAACCACCGGGCGCTCCCT
CACCCGCCTGACCGCAGCAACCTCCGGACAGGTTGAATTTGATGGTTACGATGTGCTGAGTCTCTCTGCCAGCGAGTTAC
GTAAGCTACGCTGCGCCATGCAGATGATCTTCCAGGACCCGTTTGCCAGCCTGAATCCGCGCATGTCAGTGCAGGAAGCG
TTGACCGAACCGTATTTGCAGCATCAATTGGGTAGCAAGGCGCAGGCAGTGCAGAAGGCCGCAGCCTTGATGGAGCGTGT
CGGACTGGCGGCGTCAATGATGAAGCGCTATCCGCATGAGTTCTCCGGCGGCCAACGGCAACGCATTTGCATCGCCCGGG
CGCTGATGCTTGATCCAAAGATGATCATTGCTGACGAGTCAGTTTCCGCACTGGATGTGACGGTGAAAGCGCAAATCATC
AACCTGCTGCTGGATTTACAACAAAGCCTGGGACTGTCGTATTTGTTTATTTCCCACGATATGGCGGTGGTAGAGCGCAT
CAGTCACCGCGTCGCGGTGATGTTATTGGGCGAGATTGTCGAAATTGGCCCGCGCGCGGCGATTTTTGAAAATCCGCAGC
ATGACTACACCCGTAAGCTGCTGGCATCGGTGCCAGTGCCCGATCCGGCCAGACGGCAACTGAAGCGAAAAATGGAGGTC
AGCGAGCTGAAAAGCCCGGTGCGGCCGCTGGGTTATGTCCCGGAAACGCGGCGTTATCGCGAAGTGAGCGCCGGACATTG
GGTGATGGAGTGA

Protein sequence :
MSVLRVENLTVAFRSDQQWREVVKDVSFDIQAGETLAIVGESGSGKSVTSMAIMRLLNARHTRISGKVLLNGVDLLGLSE
AAMRDVRGNAVAMIFQEPMTSLNPSFTIGHQIAEALITHRKISKRAAREETVRLLEKVRIPNAAKRFDDYPHHFSGGMRQ
RVMIAMALALRPRLLIADEPTTALDVTIQGQILDLIKTLQEEEGTAVLFITHDMGVVAEVADRTLVMYQGEKVESGTTAE
IFSAPAKAYTRTLIATVPQLGAMRGLDGPRKFADEATVAYTLPSPGSQPLLAVKNLSTRFNIHEGLLSRKTGAVHAVENI
SFELLPGETLSLVGESGCGKSTTGRSLTRLTAATSGQVEFDGYDVLSLSASELRKLRCAMQMIFQDPFASLNPRMSVQEA
LTEPYLQHQLGSKAQAVQKAAALMERVGLAASMMKRYPHEFSGGQRQRICIARALMLDPKMIIADESVSALDVTVKAQII
NLLLDLQQSLGLSYLFISHDMAVVERISHRVAVMLLGEIVEIGPRAAIFENPQHDYTRKLLASVPVPDPARRQLKRKMEV
SELKSPVRPLGYVPETRRYREVSAGHWVME

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 2e-97 44
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-78 41
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-78 41
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 3e-78 41
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 3e-78 41