Gene Information

Name : Pat9b_0917 (Pat9b_0917)
Accession : YP_004114797.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Unknown
Product : riboflavin biosynthesis protein RibD
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG0117
EC number : 1.1.1.193
Position : 1050674 - 1051786 bp
Length : 1113 bp
Strand : +
Note : TIGRFAM: riboflavin biosynthesis protein RibD; KEGG: eta:ETA_25320 riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding

DNA sequence : 
ATGATCGACGAACGCTATATGGCGCGCGCGCTGGAACTGGCGCGTCGCGGCTGTTTTACCACCACCCCCAACCCGAATGT
CGGTTGTGTGATCGTGCGGGATGGCGAAATTGTCGGCGAAGGCTGGCATCATCGCGCGGGTGAGCCGCATGCGGAAGTCC
ATGCGCTGCGCATGGCGGGTGAGAAAGCCAGAGGCGCGACCGCCTATGTCACGCTGGAACCTTGTAGCCACCATGGCCGT
ACACCGCCTTGCTGCGATGCATTGATTGCGGCGGGCGTCAGCCGGGTAGTTGCGGCCATGCAAGATCCAAATCCACAGGT
GGCGGGTCGTGGCTTATATCGCCTGCAGCAGGCCGGGATTGCTGTGAGTCACGGTTTGATGATGAACGCAGCCGAAGCGA
TCAATCGCGGCTTCCTGAAGCGGATGCGTACCGGTTTCCCGTGGATTCAGCTCAAACTGGGCGCATCGCTGGATGGCCGT
ACAGCGATGGCGAGTGGTGAAAGCCAATGGATCACCTCTGCGGCAGCAAGGCGCGATGTGCAACGTTTTCGTGCCCAGAG
TTCGGCTATCCTTACCACCAGTGCGACGGTGCTGGCGGATAACCCCTCGCTGACGGTGCGCTGGAATGAACTCAATGACG
AGGTGCGCCAGCAGTTGGATGAGCAGCAATTGCGTCAGCCGGTGCGCGTGGTGATTGATAGCCAGCAGCGCGTAACCCCG
CAGCATCGCCTGATCGATCAACCGGGTGAAACCTGGCTGATGCGCAGTGCACCCGATCAACACGTCTGGCCGGAGTCGGT
TACGCAGATTGCCGTGCCACAGCGCGAGAGCCAACTGGATCTGGTGGCGATGATGATGTTGCTTGGTCAACGTCAGATTA
ACAGCGTGTGGGTCGAAGCCGGAGCGAAGCTTGCCGGTGCGTTGTTGCAGGCGGGGTTGGTAGATGAACTGATTGTCTAT
CTGGCACCGAAACTGCTGGGTAATGCCGCCCGTGGCTTGTGTGAATTACCGGGTCTGGAACATCTGGCCGCTGCGCCAGC
ATTGAATTTTAGCGATGTGCGCAGGGTCGGTGGGGACCTGCGTCTGACCCTGACGCCACATGGAAAAGCCTGA

Protein sequence : 
MIDERYMARALELARRGCFTTTPNPNVGCVIVRDGEIVGEGWHHRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHHGR
TPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIAVSHGLMMNAAEAINRGFLKRMRTGFPWIQLKLGASLDGR
TAMASGESQWITSAAARRDVQRFRAQSSAILTTSATVLADNPSLTVRWNELNDEVRQQLDEQQLRQPVRVVIDSQQRVTP
QHRLIDQPGETWLMRSAPDQHVWPESVTQIAVPQRESQLDLVAMMMLLGQRQINSVWVEAGAKLAGALLQAGLVDELIVY
LAPKLLGNAARGLCELPGLEHLAAAPALNFSDVRRVGGDLRLTLTPHGKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 5e-60 47
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 5e-60 47