Gene Information

Name : Pat9b_0733 (Pat9b_0733)
Accession : YP_004114614.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 857233 - 858027 bp
Length : 795 bp
Strand : +
Note : KEGG: kpu:KP1_1003 hydroxamate-dependent iron transport system ATP-binding component; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGCAGCATCCGCACCACGAAGAAACCACCTTTACGCTGGACAACGTCAGTTTTCGCGTGCCGGGACGCACGCTGCTTCA
TCCGCTCTCATTGACCTTTACGCCGGGTAAAGTCACGGCCCTGATTGGTCATAACGGTTCAGGCAAATCTACGCTGCTGA
AAATGCTGGGACGCCACCAGGTGGCCAGCGAAGGGCGCGTGTTACTGAACGGTGAAGCGGTCGAGCAGTGGGGCAGCAAG
GATTTTGCCCGTCAGGTGGCGTATCTGCCGCAGCAGTTACCGGCAGCGGAAGGGATGACGGTGCGTGAGCTGGTGGCGAT
TGGGCGTTATCCGTGGCACGGGGCGCTGGGGCGTTACGGTCAGGAAGATCGTGACCGTGTAGAGGAAGCGATAGCGCTGG
TCGGGCTGAAACCGTTCGCCGGGCGGCTGGTTGACAGCCTGTCGGGCGGTGAACGTCAGCGTGCCTGGCTGGCGATGCTG
GTGGCACAAAACAGCCGCTGCCTGCTGCTGGATGAACCGACTTCCGCACTGGATATTGCCCACCAGGTTGAGGTGTTGGC
GTTGATTCAGCGCCTGAGCCAGGAGCGTGGTTTGACGGTGATTGCGGTGCTGCATGATATCAATATGGCGGCGCGTTATT
GTGACCAACTGGTGGCGTTGCGCGGCGGGGAGATGATTGCTGAAGGGGGACCGGAGGTGATCATGCAGGCTGATGTGCTG
GGCAGCATTTACGGCATCCCGATGGGCATTTTGCCTCATCCGCAGGGCGGCGCGCCCGTCAGTTTCGTTTACTGA

Protein sequence : 
MQHPHHEETTFTLDNVSFRVPGRTLLHPLSLTFTPGKVTALIGHNGSGKSTLLKMLGRHQVASEGRVLLNGEAVEQWGSK
DFARQVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRYGQEDRDRVEEAIALVGLKPFAGRLVDSLSGGERQRAWLAML
VAQNSRCLLLDEPTSALDIAHQVEVLALIQRLSQERGLTVIAVLHDINMAARYCDQLVALRGGEMIAEGGPEVIMQADVL
GSIYGIPMGILPHPQGGAPVSFVY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-44 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-37 42
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-37 42
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-37 42
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-37 42
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-45 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0733 YP_004114614.1 ABC transporter-like protein BAC0164 Protein 1e-44 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0733 YP_004114614.1 ABC transporter-like protein VFG1042 Protein 1e-44 44
Pat9b_0733 YP_004114614.1 ABC transporter-like protein VFG0925 Protein 1e-44 44