Gene Information

Name : Pat9b_0497 (Pat9b_0497)
Accession : YP_004114378.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 580049 - 580711 bp
Length : 663 bp
Strand : -
Note : KEGG: esa:ESA_03574 DNA-binding transcriptional regulator BasR; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence : 
ATGAAACTGTTAATCGTTGAGGATGATGCGCTGCTGCAATCGGGCCTGGCCCAGGCGCTCAGCGCCCAGGGTTATGCCGT
CGACTGTGCCGCCAGCGCCGCAGAAAGTAACGCATTGCTGCGTAGCGGACAGTACAGCCTGATCGTGTTGGATCTCGGTC
TGCCGGATCGCGACGGTGCCACGCTGCTGCGTCAATGGCGGCGTGATGGGATCAACGTTCCGGTCTTGATTCTTACCGCG
CGCGATGCGCTGGAAGATCGGGTCGACGGGCTGGATGCCGGTGCCGATGACTATCTGGTAAAACCTTTTGCGCTGGTTGA
ATTGCAGGCCCGCGCCCGGGCGTTAATTCGTCGCTATCAGGGCCACAGCGACAACCTGCTGCAACAGGGCGATCTGACGC
TCAACCTCAGTTCTCAGCAAGTGTTGCTGGAAAACTTGCCGCTGGAGATCACCCCCAAAGAGTTCGCGCTGCTGACGCGT
CTGTTGATGCGGGTCGGGCAGAACGTGCACCGTGAAACCCTACAGCAGGATCTCTACAGCTGGAACGATGATCCCGGCTC
CAATACCCTCGAAGTCCATATTCATAATCTGCGCCGTAAACTCGGCAAAGATCGCATCAAAACCGTTCGCGGTGTGGGTT
ACCGGCTGGAAGTGCGCGAATGA

Protein sequence : 
MKLLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGLPDRDGATLLRQWRRDGINVPVLILTA
RDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQGHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTR
LLMRVGQNVHRETLQQDLYSWNDDPGSNTLEVHIHNLRRKLGKDRIKTVRGVGYRLEVRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-34 46
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-26 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0497 YP_004114378.1 winged helix family two component transcriptional regulator BAC0487 Protein 7e-62 65
Pat9b_0497 YP_004114378.1 winged helix family two component transcriptional regulator NC_002516.2.879194.p Protein 2e-31 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0497 YP_004114378.1 winged helix family two component transcriptional regulator VFG0473 Protein 2e-51 56
Pat9b_0497 YP_004114378.1 winged helix family two component transcriptional regulator VFG0596 Protein 6e-27 42