Gene Information

Name : Pat9b_3963 (Pat9b_3963)
Accession : YP_004117809.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4329233 - 4329895 bp
Length : 663 bp
Strand : +
Note : KEGG: pwa:Pecwa_4530 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence : 
ATGCGCATTTTATTGATTGAGGACGACAGAATAATCGGTGACGGCCTGAAAGTCGGCCTGACCAAACTCGGTTTCAGCGT
GGACTGGTTCGTTTCCGGTGACGCTGGCTTTCAGGCGCTGGCATCTGCCCCCTGGGATGCCGTGATCCTTGATTTGTCGC
TGCCGGAAAGAGATGGACTCGATATCCTGCGCCAGTGGCGGCAACAGGGCCAGGATGTGCCGGTGTTGATCCTCACCGCG
CGCGATGCGCTCGATCAGCGGGTTCAGGGTTTGCAACTGGGCGCAGATGACTACCTGTGCAAGCCATTTGCGCTGGCCGA
AGTTGCAGCACGTCTGGAAGCGCTGATCCGTCGGCGTCACGGCCAGTTACAGCCGGAGCTGCGCCACGGCAAGGTGGTGA
TGTCCCCAGCCAGCCACAGCGTGCTGCTGGCAGGGGAACCGGTAACACTGAAAAGTCGTGAACTGGCGCTACTGGAGCTG
TTCCTGCGCAATCCTGGTCGGGTGCTGACACGCAGCCAACTGGAGGAGAAGCTCTACAGCTGGGATGACGATGTCTCCAG
TAATGCCGTGGAGGTTCACATCCATCATCTACGTAAAAAGCTCGGCAGCCAGTTTATCCGTACCGTGCATGGTGTCGGTT
ATACCCTGGGAGCCGCAGAATGA

Protein sequence : 
MRILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPERDGLDILRQWRQQGQDVPVLILTA
RDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRHGQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLEL
FLRNPGRVLTRSQLEEKLYSWDDDVSSNAVEVHIHHLRKKLGSQFIRTVHGVGYTLGAAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 3e-33 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_3963 YP_004117809.1 winged helix family two component transcriptional regulator BAC0487 Protein 2e-33 44
Pat9b_3963 YP_004117809.1 winged helix family two component transcriptional regulator BAC0083 Protein 2e-27 41
Pat9b_3963 YP_004117809.1 winged helix family two component transcriptional regulator BAC0347 Protein 1e-28 41
Pat9b_3963 YP_004117809.1 winged helix family two component transcriptional regulator BAC0638 Protein 6e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_3963 YP_004117809.1 winged helix family two component transcriptional regulator VFG0473 Protein 7e-33 43
Pat9b_3963 YP_004117809.1 winged helix family two component transcriptional regulator VFG1390 Protein 5e-28 42