Gene Information

Name : Pat9b_3931 (Pat9b_3931)
Accession : YP_004117777.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Resistance
Product : ATP-dependent DNA helicase RecG
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1200
EC number : -
Position : 4287639 - 4289750 bp
Length : 2112 bp
Strand : +
Note : TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; KEGG: eta:ETA_00390 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase ; helicase doma

DNA sequence :
ATGGTGGGCAACCATGCAAGCGACGGGCAAAAAATGAAAGGCCGTCTGCTGGATGCCATCCCGCTCAGTACCCTGACCGG
CGTCGGCGCCAGCCAGGCGGCGAAACTGGCTAAGATTGGCCTGTACACCATCCAGGATCTGCTGCTGCACCTGCCGTTAC
GCTACGAAGACCGCACCCAACTCTATCGCATTAATGACCTGCTGCCGGGTATCTGGGCCACGGTGGAAGGTGAAGTATTA
AGTAGTGAAATCACCTTTGGCCGCCGCCGTATGCTGGTATGCCAAATCAGCGATGGCTCGGGTGTGCTGACCATGCGCTT
CTTCAACTTCAATGCTGGGATGAAAAACAGCCTGGCGACAGGCCGCCGCGTCACCGCATACGGTGAAATCAAACGCGGCC
AGCGTGGCGCGGAAATTATTCATCCGGAATATCGCATCCAGGGCGAGCACAGCAACGTTGAGTTGCAGGAAACCCTGACG
CCGGTGTATCCCACCACCGAAGGCATTCGCCAGGCAACGCTGCGTAACCTGACCGATCAGGCGCTGACGTTGCTGGAAAC
CTGCGCCATTGCTGAGCTGTTGCCGCCGGAACTGAGTGGCGGGTTGATCAGCCTGCCAGATGCCTTGCGCACCCTGCATC
GTCCTCCCCCGGATTTACGCCTGAGTGAACTGGAAACCGGACGCCATCCGGCGCAGCGCCGTCTGATTATGGAGGAGCTG
CTGGCACATAACCTCAGCATGCTGGCCGTGCGCGCGGGCGCACAGCGTCATCACGCGTTGCCGATGCCTGCCAATCATCA
GCTGGTCGATCAATTGCTGGCCGCCCTGCCGTTCTCCCCCACCGGTGCGCAGCAACGGGTGGTCGCGGAAATTGAGCGCG
ACCTGGCACATGATTTCCCGATGATGCGTCTGGTACAGGGCGATGTGGGATCGGGCAAAACGCTGGTCGCCGCCATGGCG
GCGCTGAATGTGATTGCTTATGGCAAGCAGGTGGCGCTGATGGCACCCACCGAATTACTCGCCGAACAGCACGCTAATAA
CTTCCGCCAGTGGTTTGCGCCACTCGGCATTGAAGTGGGCTGGCTGGCGGGTAAACAGAAAGGCAAGGCGCGTCAGGCGC
AGCAGGAAGCCATTGCCAGCGGTCAGGTGGCAATGGTGGTCGGCACCCATGCGCTGTTCCAGGAGCAGGTACAATTTAAC
GGCATGGCGCTGGTGATTATCGATGAACAGCACCGTTTTGGCGTCCACCAGCGACTGGCGCTGTGGGAAAAGGGCGAAGA
GCAGGGTTTTCATCCGCATCAGTTGATCATGACCGCCACGCCGATTCCACGCACCCTGGCGATGACCGCCTACGCGGATC
TCGATACCTCAACCATTGACGAGCTACCGCCAGGCCGTACCCCAGTGACCACCGTCGCCATTCCCGACAGTCGCCGCAGC
GATATCATCACGCGCGTGCAGAGCGCCTGTCATGAAGGACGCCAGGCATATTGGGTCTGTACGCTGATCGAAGAATCCGA
ACTGCTGGAGGCACAGGCAGCCGAAGCCACCTGGCAGGAGCTGAAGGTGGCACTACCGGATCTTCAGGTTGGGCTGGTGC
ATGGCCGCATGAAACCGGCTGAGAAGCAGGCGGTGATGCAGGCGTTCAAGGCCAATGAAATCCAACTGCTGGTCGCCACC
ACGGTGATCGAAGTCGGGGTGGATGTGCCGAATGCCAGCCTGATGATTATCGAAAACCCGGAACGTCTCGGACTTGCGCA
GCTGCATCAGTTGCGTGGGCGCGTGGGGCGCGGCGCGATCGCCTCGCATTGCGTGTTGCTGTACAAAGCACCGCTGAGCA
AAACGGCGCAAAAACGCTTACAGGTGCTACGTGACAGCAACGATGGCTTTGTTATCGCCCAGCATGATTTGGAAATTCGT
GGTCCCGGTGAGTTGCTTGGCACCCGCCAGACCGGCAACGCGGAGTTCAAAGTCGCCGATTTGCTGCGCGACCAGGCCAT
GATCCCGGAAGTTCAGCGCGTAGCGCGCCATATCCACCAGCACTATCCGCAGCAGGCGGTGGCGTTGATTGAGCGCTGGT
TACCGGAAACCGAACGCTACAGTAACGCGTAG

Protein sequence :
MVGNHASDGQKMKGRLLDAIPLSTLTGVGASQAAKLAKIGLYTIQDLLLHLPLRYEDRTQLYRINDLLPGIWATVEGEVL
SSEITFGRRRMLVCQISDGSGVLTMRFFNFNAGMKNSLATGRRVTAYGEIKRGQRGAEIIHPEYRIQGEHSNVELQETLT
PVYPTTEGIRQATLRNLTDQALTLLETCAIAELLPPELSGGLISLPDALRTLHRPPPDLRLSELETGRHPAQRRLIMEEL
LAHNLSMLAVRAGAQRHHALPMPANHQLVDQLLAALPFSPTGAQQRVVAEIERDLAHDFPMMRLVQGDVGSGKTLVAAMA
ALNVIAYGKQVALMAPTELLAEQHANNFRQWFAPLGIEVGWLAGKQKGKARQAQQEAIASGQVAMVVGTHALFQEQVQFN
GMALVIIDEQHRFGVHQRLALWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSTIDELPPGRTPVTTVAIPDSRRS
DIITRVQSACHEGRQAYWVCTLIEESELLEAQAAEATWQELKVALPDLQVGLVHGRMKPAEKQAVMQAFKANEIQLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAIASHCVLLYKAPLSKTAQKRLQVLRDSNDGFVIAQHDLEIR
GPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRVARHIHQHYPQQAVALIERWLPETERYSNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
recG CAJ77039.1 ATP-dependent DNA helicase Not tested AbaR1 Protein 3e-92 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_3931 YP_004117777.1 ATP-dependent DNA helicase RecG BAC0356 Protein 0.0 60