Gene Information

Name : Pat9b_3756 (Pat9b_3756)
Accession : YP_004117602.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : type VI secretion system effector
Function : -
COG functional category : S : Function unknown
COG ID : COG3157
EC number : -
Position : 4095415 - 4095897 bp
Length : 483 bp
Strand : +
Note : KEGG: ctu:Ctu_1p00460 protein hcp1; TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: protein of unknown function DUF796

DNA sequence :

ATGGCGATAGATATTTTTTTAAAAGTCGATGGCATCAATGGTGAATCGCAAAATGCGAATCACCAAAACTGGATCGATGT
TTATTCATTTAGTTGGGGTGCAAAGCAGCCCGGTAATATGGCAGTCGGTGGCGGCGGCGGTGCCGGTAAAGTGAATTACC
GAGACCTGACGGTACAGGCGTTGGTTGATAAAGGCACCCCGGCATTATTGAAATATTGCTCCAGCGGCAAACATATTGCC
AAAGTTCAACTTTCAATCTGCAAAGCAGGTGGTCAGGAAGTCGAATACACCCTTATTACGCTGGAAGATGTGTTGGTAAC
ACAAACCGATTATATCGGCGTGGCGCATGGCTCAACCCTGGGCATGGAGTACGCATTCCAGGCCAGTAAAGTGGCAATGG
AGTATTGGGAACAAACCTCGCAGGGGAATAAAGGTGCGTCAGTGCAGATGGGTTGGGATATCAAACAAAATAAAGAAGTC
TAA

Protein sequence :

MAIDIFLKVDGINGESQNANHQNWIDVYSFSWGAKQPGNMAVGGGGGAGKVNYRDLTVQALVDKGTPALLKYCSSGKHIA
KVQLSICKAGGQEVEYTLITLEDVLVTQTDYIGVAHGSTLGMEYAFQASKVAMEYWEQTSQGNKGASVQMGWDIKQNKEV

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
STY0302	NP_454882.1	conserved hypothetical protein	Not tested	SPI-6	Protein	3e-19	42

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Pat9b_3756	YP_004117602.1	type VI secretion system effector	VFG2071	Protein	3e-19	45