Gene Information

Name : Pat9b_0359 (Pat9b_0359)
Accession : YP_004114241.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 430152 - 430520 bp
Length : 369 bp
Strand : +
Note : KEGG: spe:Spro_3482 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain

DNA sequence : 
ATGAATCAGAGTCAATTTATCCGTAGTTTGCTGGACTGGATAGAAGACAACTTAGGACACGATTTGCATCTGGATGAGGT
AGCACGCCGTTCCGGGTATTCCCGCTGGCATCTGCAACGTCTGTTTCGACAGCACACCGGATTTTCACTGGCCGAATACA
TTCGCCAGCGCCGGTTGACGGAATCGGCGTTGACGCTACTGAACAGTGATGAGGCGATCCTGCAGGTGGCGATGAGCTAC
GGCTTCGACACGCAGCAGGCTTATACCCGCACCTTTAAAAACTATTTTCGTGTCACCCCGGGTCAGTTGCGTCGTCAGCG
CCGCGTTGAACCGGATCGTCTGCTGTTTCCGCTGGCGGTGGCCAGTTGA

Protein sequence : 
MNQSQFIRSLLDWIEDNLGHDLHLDEVARRSGYSRWHLQRLFRQHTGFSLAEYIRQRRLTESALTLLNSDEAILQVAMSY
GFDTQQAYTRTFKNYFRVTPGQLRRQRRVEPDRLLFPLAVAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 6e-23 48
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 6e-23 48
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 8e-21 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP001918.1.gene2033. Protein 1e-26 56
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP000647.1.gene1624. Protein 2e-25 54
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator BAC0560 Protein 3e-26 54
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator NC_002695.1.917339.p Protein 3e-26 54
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP000034.1.gene1596. Protein 2e-26 54
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP001138.1.gene1637. Protein 6e-26 52
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 3e-23 48
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 3e-23 43
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 3e-21 42
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 7e-21 42
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 1e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator VFG1038 Protein 2e-23 48
Pat9b_0359 YP_004114241.1 AraC family transcriptional regulator VFG0585 Protein 2e-21 42