Gene Information

Name : Pat9b_0358 (Pat9b_0358)
Accession : YP_004114240.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : winged helix family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 429328 - 429987 bp
Length : 660 bp
Strand : -
Note : KEGG: vap:Vapar_4983 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver

DNA sequence : 
ATGCGTGTGCTGCTGGTTGAAGATGATGAAATGATTGGCGCTAACTTGCAGCAGGCGCTGGAGGCCGCAGGCTGGTCGGT
GGACTGGGTACGCGATGGGGTGTTTGCCACCAATGCCTGGACCGAAGGCGGCTACAGCTGCGTGTTGCTCGACCTCGGTT
TACCGCGTGAAGATGGCATCCATGTATTGCGTCGCGCCCGCAACCGTGGCGATATGACGCCGGTGCTGGTGCTCACCGCA
CGGGATACCGTTGCCCAACGCGTCCAGGGTCTCGACAGTGGTGCCGATGATTACCTGCTCAAACCCTTTGATCTGCAAGA
GGTGCTGGCGCGAATGCGAGCGATTACCCGACGTCGTCACGGTGCGGCGGATTCCCTGTTAGGCAGCGGCGACGTGCAGC
TCGATATGATGACGCGTGAAGTGCTGTACAAAGGGCAGCGCGAGCAACTTACCGCACGTGAATACGCCCTACTTTATGCG
CTGCTGGAGCGTCCGGGTGCCATTCTGTCGCGCGAACAACTGGAAAACCGCATCTACGGCTGGGGCGAAGAAGTGACCAG
CAATGCGGTTGATGTCTTAATTCACGGCATGCGCCGCAAGCTGGATAACGAAGTGATTCGCAACGTGCGCGGCCTGGGGT
GGCGAGTCCCTGCAATATGA

Protein sequence : 
MRVLLVEDDEMIGANLQQALEAAGWSVDWVRDGVFATNAWTEGGYSCVLLDLGLPREDGIHVLRRARNRGDMTPVLVLTA
RDTVAQRVQGLDSGADDYLLKPFDLQEVLARMRAITRRRHGAADSLLGSGDVQLDMMTREVLYKGQREQLTAREYALLYA
LLERPGAILSREQLENRIYGWGEEVTSNAVDVLIHGMRRKLDNEVIRNVRGLGWRVPAI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0358 YP_004114240.1 winged helix family two component transcriptional regulator BAC0487 Protein 3e-29 42
Pat9b_0358 YP_004114240.1 winged helix family two component transcriptional regulator BAC0197 Protein 5e-25 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0358 YP_004114240.1 winged helix family two component transcriptional regulator VFG0473 Protein 3e-32 44
Pat9b_0358 YP_004114240.1 winged helix family two component transcriptional regulator VFG1390 Protein 4e-25 42