Gene Information

Name : Pat9b_0317 (Pat9b_0317)
Accession : YP_004114199.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Resistance
Product : AraC family transcriptional regulator
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 377574 - 378002 bp
Length : 429 bp
Strand : -
Note : KEGG: eta:ETA_30790 DNA-binding transcriptional regulator SoxS; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain

DNA sequence : 
ATGATGCAAGAGGAAATCATTCATTCACTGACTCACTGGATCGATCAGAATCTGGATAAAACCCTGTCGATTGATGAAGT
AGCGGCTAAATCAGGTTATTCCAAATGGCACCTGCAACGTATGTTCCGTACCGTGACGAAACAAACGTTGGGGGGTTATA
TCCGCGAACGTCGCTTAACGCTGGCCGCTGAGGCTCTGCGCCAGACGCAACGTCCGGTATTTGATATCGCTATGCAGTAC
GGTTACGACTCACAACAAACCTTTTCCCGCGTTTTTCGCCGTCAGTTTTCGCAAACGCCGACCGCGTATCGCCACACCAT
GCGCCGTCAGGCGATGATCCAGCGTCCACGCCTGGTGAGCTTTGATTGCAGCGAGAATATGGCCAGCTTTACCCAGCGTA
CCACCGGCGAGTGCTGCCCGGTGCGCTAA

Protein sequence : 
MMQEEIIHSLTHWIDQNLDKTLSIDEVAAKSGYSKWHLQRMFRTVTKQTLGGYIRERRLTLAAEALRQTQRPVFDIAMQY
GYDSQQTFSRVFRRQFSQTPTAYRHTMRRQAMIQRPRLVSFDCSENMASFTQRTTGECCPVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 1e-33 67
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 3e-23 48
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 3e-23 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator CP000647.1.gene4499. Protein 9e-35 69
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator BAC0371 Protein 8e-34 68
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator NC_002695.1.914293.p Protein 8e-34 68
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator CP001918.1.gene327.p Protein 1e-34 68
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator CP000034.1.gene4505. Protein 2e-33 67
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator CP001138.1.gene4488. Protein 3e-34 67
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator CP001138.1.gene612.p Protein 1e-26 51
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator NC_010558.1.6276025. Protein 1e-23 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator VFG0585 Protein 3e-34 67
Pat9b_0317 YP_004114199.1 AraC family transcriptional regulator VFG1038 Protein 1e-23 48