Gene Information

Name : Pat9b_3267 (Pat9b_3267)
Accession : YP_004117119.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3603560 - 3604402 bp
Length : 843 bp
Strand : +
Note : PFAM: ABC-3 protein; KEGG: ent:Ent638_1114 ABC-3 protein

DNA sequence : 
ATGCTGACGTTGCTGCTTGAACCTTTCCAGTTTGCTTTTATGAACCAGGCCTTGTTGATTGCGCTGGTGGTGGCGATTCC
CTGCGCGTTGTTATCGGTATTTCTGGTGCTGAAAGGCTGGGCCTTGATGGGCGATGCCATGAGCCATGCGGTGTTTCCCG
GGATTGTGCTGGCGTGGATACTCGGCCTGCCGCTGGCACTGGGGGCGTTTGTTGCCGGGGTATTTTGTGCCGTCGCCAGT
GGTTATCTGAAGGACAACAGTCGCATCAAGCAGGATACGGTGATGGGCATTGTCTTCTCCGGCATGTTCGCGGTCGGGCT
GATTTTGTATATTGCCGCCAAACCGGAGGTGCATCTGGATCACATCCTGTTTGGCGATATGTTGGGTATTACCCTCGCAG
ACATGGTGCAAACCACGCTTATCGCGGCGGTGATTCTGCTGATCATGGCAGTGAAATGGCGGGATTTTTTGCTGTTCTGC
TTCGATCCACAACAAGCCCAGGCCAGCGGATTACGCACCGGCTGGTTGCATTACGGCCTGCTGTGTATGGTCGCGTTAAC
CATCGTCGCCACCATGAAGGCGGTGGGCATTATTCTGTCGGTATCACTGTTGATTGCGCCAGGGGCGATTGCGCTGTTGC
TGACCCAACGCTTTTCACACGCGTTGCTGGTGGCGGTGACGATAGCGGTGCTGGTTTCGCTCAGCGGCGTGTATCTGTCG
TTTTATCTGGATAGCGCACCTGCGCCGACCATTGTGGTGTTATTTGCCCTGGTGTTTATCGTCGCGTTTATCCGTGCCAG
CCTGCTGGCGCGGCGCGCTGAACGGCAAACGCTGCAAACTTAG

Protein sequence : 
MLTLLLEPFQFAFMNQALLIALVVAIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAWILGLPLALGAFVAGVFCAVAS
GYLKDNSRIKQDTVMGIVFSGMFAVGLILYIAAKPEVHLDHILFGDMLGITLADMVQTTLIAAVILLIMAVKWRDFLLFC
FDPQQAQASGLRTGWLHYGLLCMVALTIVATMKAVGIILSVSLLIAPGAIALLLTQRFSHALLVAVTIAVLVSLSGVYLS
FYLDSAPAPTIVVLFALVFIVAFIRASLLARRAERQTLQT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-70 74
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-70 74
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-70 74
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-70 73
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-70 73
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 8e-32 41
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-31 41
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-31 41
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-31 41
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_3267 YP_004117119.1 ABC-3 protein BAC0352 Protein 6e-71 74
Pat9b_3267 YP_004117119.1 ABC-3 protein BAC0442 Protein 6e-53 56
Pat9b_3267 YP_004117119.1 ABC-3 protein BAC0351 Protein 5e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_3267 YP_004117119.1 ABC-3 protein VFG0528 Protein 6e-71 74
Pat9b_3267 YP_004117119.1 ABC-3 protein VFG0527 Protein 4e-32 41