Gene Information

Name : Pat9b_3264 (Pat9b_3264)
Accession : YP_004117116.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : periplasmic solute-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3600978 - 3601880 bp
Length : 903 bp
Strand : +
Note : KEGG: ent:Ent638_1111 periplasmic solute binding protein; manually curated; PFAM: periplasmic solute binding protein

DNA sequence : 
ATGAAAATGATGAGAGGAATAGTGCTTGGCACGCTGCTGAGTACGTTGTTCACCCCGGGCGCGATGGCCAGCGAAAAACT
AAAGGTCATCACCACCTTCACCGTGATCGCCGATATGGCGAAAAATGTCGCCGGGGATGCCGCTGAGGTCAGTTCGATCA
CCAAACCGGGAGCAGAAATTCATGAATATCAGCCGACGCCGGGCGATATTAAACGCGCCCAGGGTGCCCAACTGATTCTC
GCTAACGGTATGAACCTTGAATTGTGGTTCCGTCGTTTTTATCAGCACTTAAAAGATGTGCCCGAAGTTATCGTCACCCA
GGGCGTGACGCCAATGGGCATCACCGAAGGCCCGTACAACGGTAAACCCAATCCTCATGCCTGGATGTCACCCGATAATG
CGCTGATTTACGTCGATAATATTCGCGACGCGCTGGTGAAATACGATCCAGACAATGCGGCGATCTATCAGCGCAACTCC
GCCGCTTACAAACAAAAAATCACTGATACGCTGCAACCGCTGCGTCAGCAGGTGGCACAGCTGCCAGAAAATAAACGCTG
GCTGGTATCGAGCGAAGGCGCATTTTCCTATCTGGCGCGCGATTTAGGGCTGAAAGAACTCTATCTATGGCCCATCAATG
CCGATCAGCAAGGCACACCGCAGCAGGTACGTCGGGTGATTGACCGCGTGCGTGCGGAACACATCCCTGCGGTGTTCAGT
GAAAGCACGGTATCAGACAAACCCGCGCGTCAGGTGGCTCGCGAGACGGGCGCGCATTACGGTGGCGTGTTGTATGTCGA
TTCGCTGAGCGGCCCTGATGGCCCGGTACCGACCTATATCGACCTGCTCAACGTCACCACCCGCACCCTGGTGCAGGGTA
TCCAAGACGGTATCAAGGAGTAG

Protein sequence : 
MKMMRGIVLGTLLSTLFTPGAMASEKLKVITTFTVIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLIL
ANGMNLELWFRRFYQHLKDVPEVIVTQGVTPMGITEGPYNGKPNPHAWMSPDNALIYVDNIRDALVKYDPDNAAIYQRNS
AAYKQKITDTLQPLRQQVAQLPENKRWLVSSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRRVIDRVRAEHIPAVFS
ESTVSDKPARQVARETGAHYGGVLYVDSLSGPDGPVPTYIDLLNVTTRTLVQGIQDGIKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-109 75
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-109 75
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-109 75
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-109 75
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-109 75

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_3264 YP_004117116.1 periplasmic solute-binding protein BAC0349 Protein 1e-109 75
Pat9b_3264 YP_004117116.1 periplasmic solute-binding protein BAC0439 Protein 4e-89 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_3264 YP_004117116.1 periplasmic solute-binding protein VFG0525 Protein 1e-109 75