Gene Information

Name : Pat9b_0299 (Pat9b_0299)
Accession : YP_004114181.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 357434 - 358840 bp
Length : 1407 bp
Strand : +
Note : SMART: AAA ATPase; manually curated; TIGRFAM: replicative DNA helicase; KEGG: dda:Dd703_0741 replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein

DNA sequence :
ATGGCAGGAAATAAACCCACCAACAAATCGAACGAAACCCGCGACCGCCAGCTGGAGGGCGTGAAAATGCCGCCGCATTC
CATTGAAGCGGAGCAGTCGGTACTCGGTGGGTTGATGCTGGATAATGAGCGCTGGGACAACGTCTCCGAGCGTGTCGTGG
CGGAAGATTTCTTCAACCGCTCGCACCGGCTGATCTTCTCCGAAATGCAGAACCTGCTGGAGGCCGGGCAGCCTATCGAC
CTGATTACGCTGTCTGAATCGCTCGAAACGCGCGGTGAGCTGGAGATGGCGGGGGGCTTTGCCTATCTTGCCGAACTGGC
GAAAAACACCCCAAGCGCCGCCAACATTGGCGCCTATGCTGACATCGTCCGTGAACGCGCCGTGGTGCGCGAAATGATCT
CGGTCGCCAATCAGATTGCCGATGCCGGTTACGATCCGCAGGGGCGCAGCAGCGAAGACCTGCTCGATTTTGCGGAATCC
AACGTCTTCAAGATCGCCGAACAGCGTGCCAACAAAGATGATGGCCCGAAGAACATCGAGCAAATTCTGGAAGCCACGGT
ATCGCGTATTGAATCGCTGGTTTCCACGCCACACGATGGTGTGACCGGGGTGGATACCGGTTATCAGGATCTGAACAAAA
AAACCGCCGGTTTGCAGGGGTCAGATCTGATTATCGTGGCGGCGCGTCCGTCGATGGGTAAAACCACCTTCGCCATGAAC
CTGTGCGAAAACGCCGCCATGCTGCACGAAAAGCCGGTGCTGATTTTCAGTCTGGAAATGCCCAGCGAACAGATCATGAT
GCGTATGCTGGCTTCATTATCACGTGTTGATCAGACGCGTATCCGTACCGGTCAGCTCGAAGATGAGGATTGGGCGCGTA
TTTCTGCTTCTATGGGCATCCTGTTGGAAAAGAAGAACATGTTTATTGATGATTCTTCCGGCCTGACGCCGACAGAAGTG
CGTTCGCGTGCACGCCGTATCTATCGTGAAAACGGGGGGTTGAGCATGATCATGATCGACTACCTGCAATTGATGCGCGT
GCCTTCGTTATCCGACAACCGCACGCTGGAAATTGCGGAGATCTCGCGCTCGCTGAAAGCGTTGGCGAAAGAGTTGAACG
TGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCGCTGGAACAGCGTGCCGACAAACGCCCGGTGAACTCGGATCTGCGT
GAATCTGGCTCGATCGAACAGGATGCTGACCTGATCATGTTTATTTACCGTGATGAGGTGTATCACGAAAATAGCGATCT
GAAAGGGATCGCCGAGATCATCATTGGTAAACAGCGTAACGGACCGATTGGCACAGTACGTTTGACCTTCAATGGTCATT
GGTCGCGTTTTGATAACTACGCAGGCCCGCAATACGACGACGAATAA

Protein sequence :
MAGNKPTNKSNETRDRQLEGVKMPPHSIEAEQSVLGGLMLDNERWDNVSERVVAEDFFNRSHRLIFSEMQNLLEAGQPID
LITLSESLETRGELEMAGGFAYLAELAKNTPSAANIGAYADIVRERAVVREMISVANQIADAGYDPQGRSSEDLLDFAES
NVFKIAEQRANKDDGPKNIEQILEATVSRIESLVSTPHDGVTGVDTGYQDLNKKTAGLQGSDLIIVAARPSMGKTTFAMN
LCENAAMLHEKPVLIFSLEMPSEQIMMRMLASLSRVDQTRIRTGQLEDEDWARISASMGILLEKKNMFIDDSSGLTPTEV
RSRARRIYRENGGLSMIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLR
ESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGHWSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 9e-100 54
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-105 53
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 1e-104 52
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 3e-105 52
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 4e-101 51
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 6e-91 49
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 6e-91 49
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 1e-84 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 1e-81 46