|
Name : Pat9b_2192 (Pat9b_2192) Accession : YP_004116059.1 Strain : Pantoea sp. At-9b Genome accession: NC_014837 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 2397129 - 2399057 bp Length : 1929 bp Strand : - Note : TIGRFAM: DNA topoisomerase III; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; KEGG: eta:ETA_15670 DNA topoisomerase III; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein DNA sequence : ATGCGTTTGTTTATTGCAGAAAAACCGAGCCTCGGACGTGCCATCGCCGACGTGTTGCCTAAACCGCATCGACGTGGCGA GGGTTATATCGCGTGCGGCAATGACCAGGTCGTCACCTGGTGTGTCGGGCATTTGCTGGAGCAGGCGCAACCCGACAGTT ACGACAGCCGTTATGCACGCTGGAATCTCGCCGACTTACCGATCATCCCTGAGAAGTGGCAGCTCCAGCCGCGTCCTTCG GTGGCAAAACAACTCAAAGTCATTGAAGGTTTGTTGGCCCAGGCCACCGAAGTGGTGCACGCCGGAGACCCGGATCGCGA AGGTCAATTGCTGGTGGATGAGGTGATTGATTACCTGCAATTGCCTGCGGAAAAGCGTCAGAAGGTACAACGCTGCCTGA TTAACGACCTCAACCCACAGGCGGTGGAACGCGCTGTCAGCCGCCTGCGCGAAAATCGTGAGTTTATTCCGCTGTGTGTT TCGGCGCTGGCGCGCGCCCGTGCCGACTGGTTGTATGGCATCAATATGACCCGTGCCTGGACCCTGTTGGGGCGTAACGC GGGCTATGACGGTGTGTTGTCGGTAGGACGGGTGCAGACGCCCGTGCTGGGGCTGGTGGTCCGGCGCGATGAAGAGATCG AGAACTTTATCCCCAAGGACTATTTCGAAGTCAAAGCGCATATTGTCACGCCCAAAGATGAACGCTTTGTCGCCAGTTGG GTGCCCAGTGATGCCTGTGAGCCCTGGCAGGATGAAGAGGGGCGCTTGCTGCATCGCCCGCTGGCGGATCATGTGTTAGA ACGCATCAACGGCCAACCGGCACGGGTCACGGCCTATAACGATAAACGGGAATCCGAAATCGCGCCGTTGCCGTTTTCGC TATCCAGCTTGCAGATTGAGGCGGCGAAACGCTTTGGCCTCAGTGCGCAAAACGTACTGGATTGCTGCCAGCGGCTGTAT GAAACCCACAAGCTGATCACCTATCCACGTTCGGACAGCCGCTACCTGCCAGAAGAACATTTTGCCGGACGTCATGCGGT GCTGAACGCGATTCAGGCCCATCAGCCGGATATGACGCCACCCGCGGATTTTAACCCGGAACAACGCAACCGGTGCTGGG ACGATAAAAAAGTGGATGCCCACCATGCCATCATCCCGACAGCGCGTGCCAGCAAGGTGAATCTGAGTGAAAACGAAGCC AATATTTATGGCCTGATTGCCCGCCAGTATCTGATGCAGTTCTGTCCTGATGCGGTGTTTCGTAAGTGCGTTATCGATCT CGACATTGCCGGTGGCAAATTCGTCGCCAAGGCACGTTTTCTGGCCGAAGCGGGCTGGCGAGCGCTGCTTGGCAGCAAGG AACGCGATGAAGAGAACGACGGCACCCCCTTGCCAGTGGTAAGTAAAGGTGACGAATTGCTGTGTGAGCGCGGTGAAGTG CTGGCTAAGCAGACCCAGCCCCCCCGGCCATTTACGGACGCCACCTTGCTTTCGGCCATGACCGGCATTGCCCGCTTTGT GCAGGATAAAGATCTAAAGAAAGTGCTGCGTGCGACCGATGGTTTAGGTACGGAAGCGACGCGCGCCGGCATTATCGAAT TGCTGTTCCGGCGCACCTTTCTGGTGAAACAGGGCCGTTATATTCATTCGACACAGGCGGGCAGGGCATTGATTCACGCG CTGCCAGAAATGGCGGCACGGCCTGATATGACCGCTCACTGGGAATCGACGTTGACCCGTATTAGTGAAAAAGCCTGTCG CTACGATGAGTTTATGCAGCCGCTGGTGAGCACCTTAATTGGCCTGATTGGTCAGGCGCGCCAGCAGCCCTCGCTACAGG CATTTCGAGGCATTGCCGCGAGCGGAAGCGCGAGTGAGAAAAAACGGACCCGCAAACCCGCCCGGCGCAAAATGAAGGAG ACCGAGTGA Protein sequence : MRLFIAEKPSLGRAIADVLPKPHRRGEGYIACGNDQVVTWCVGHLLEQAQPDSYDSRYARWNLADLPIIPEKWQLQPRPS VAKQLKVIEGLLAQATEVVHAGDPDREGQLLVDEVIDYLQLPAEKRQKVQRCLINDLNPQAVERAVSRLRENREFIPLCV SALARARADWLYGINMTRAWTLLGRNAGYDGVLSVGRVQTPVLGLVVRRDEEIENFIPKDYFEVKAHIVTPKDERFVASW VPSDACEPWQDEEGRLLHRPLADHVLERINGQPARVTAYNDKRESEIAPLPFSLSSLQIEAAKRFGLSAQNVLDCCQRLY ETHKLITYPRSDSRYLPEEHFAGRHAVLNAIQAHQPDMTPPADFNPEQRNRCWDDKKVDAHHAIIPTARASKVNLSENEA NIYGLIARQYLMQFCPDAVFRKCVIDLDIAGGKFVAKARFLAEAGWRALLGSKERDEENDGTPLPVVSKGDELLCERGEV LAKQTQPPRPFTDATLLSAMTGIARFVQDKDLKKVLRATDGLGTEATRAGIIELLFRRTFLVKQGRYIHSTQAGRALIHA LPEMAARPDMTAHWESTLTRISEKACRYDEFMQPLVSTLIGLIGQARQQPSLQAFRGIAASGSASEKKRTRKPARRKMKE TE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 6e-105 | 42 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 2e-102 | 42 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 9e-110 | 41 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-108 | 41 |
