Gene Information

Name : Pat9b_1404 (Pat9b_1404)
Accession : YP_004115281.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Virulence
Product : LuxR family two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 1574675 - 1575334 bp
Length : 660 bp
Strand : +
Note : KEGG: eta:ETA_20780 response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR

DNA sequence : 
TTGATCAGCCTGCTTCTTGTTGATGACCATGAACTGGTACGCGTTGGCATTCGTCGCATACTGGAAGATATGAAGGGATT
GGTAATTGCCGGGGAAGTGGCTTGTGGTGAGGATGCGGTTAAATGGTGCCGCAACAATCCGGTGGACGTGGTGCTGATGG
ACATGAACATGCCTGGCATTGGTGGCCTTGAAGCCACGCGTAAAATCATGCGCTACAACCCGGATATCCGCATCATCATG
CTGACTATTCATACGGAAAATCCGTTACCCGCAAAGGTGATGCAAGCTGGCGCGGCGGGTTATCTGAGTAAGGGTGCTGC
ACCGCAAGAAGTGGTCAGCGCTATCCGCTCAGTGCACGCAGGGCAACGCTATATCGCTTCTGATATCGCCCAGCAGATGG
CACTCAGCCAGATTGAGCCGCAGAAAGCCGAATCCCCCTTTAGCTGTTTGTCGGAAAGGGAATTGCAGATTATGCTGATG
ATCACGCGCGGGCAGAAAGTGACGGAGATTTCCGAACAACTTAGCCTCAGCCCGAAAACCGTTAACAGCTACCGTTATCG
TATGTTCAGCAAGTTGAACATCAGTGGCGATGTGGAGTTAACGCATCTGGCCATACGACATGGTCTGTTTAATGCGGAGC
CGTTAATCAGTAGTGAGTGA

Protein sequence : 
MISLLLVDDHELVRVGIRRILEDMKGLVIAGEVACGEDAVKWCRNNPVDVVLMDMNMPGIGGLEATRKIMRYNPDIRIIM
LTIHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHAGQRYIASDIAQQMALSQIEPQKAESPFSCLSERELQIMLM
ITRGQKVTEISEQLSLSPKTVNSYRYRMFSKLNISGDVELTHLAIRHGLFNAEPLISSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 2e-45 47
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 2e-45 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_1404 YP_004115281.1 LuxR family two component transcriptional regulator VFG1889 Protein 6e-53 50