Gene Information

Name : Pat9b_1012 (Pat9b_1012)
Accession : YP_004114892.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1148136 - 1149329 bp
Length : 1194 bp
Strand : +
Note : PFAM: integrase family protein; KEGG: eta:ETA_24330 prophage integrase

DNA sequence :
ATGAAGCTCAACGTCCGTCAAATCGAGACTGCCAAGCCGAAAGACAAAGCCTGGAAACTGGCTGACGGCGGTGGTCTGTA
CCTCGAAATCTTCCCCACTGGTGGTAAAAGCTGGCGGCTGAAATACCGCTTTGCAGGAAAAGAAAAGCGCGTGGTGTTTG
GCCTCTATCCTGCGGTTACGCTGGCGCAGGCGCGCGGAAAGCGCGAAGACGCGAAAAGGATACTCGCAGCCGGTGGTGAT
CCCGGCGCGGCCAAGCAGGAAGCGAAGCAGGCCAAAATCCTCGCGGTTAACAACAACTTTGAAGCGATGGCGCGGGAATG
GCATGGGACAAAGCGGGCTAACTGGTCGCAAGGCTATGCTGACGACATTCTGGAATACCTGCGCAAAGATATTTTTCCTC
ATATCGGCAAAATGCCGGTCACTGAAATCACACCGATGCTGATGCTGGCGGTGCTGCGGAAAATGGAACAACGCGGCGTG
CTGGATAAGCTGAAGAAAACCCGCCAGGCGTGTAGTCAGATTTATGTCTACGCCATTGTTACTGGCAGGGCGGAGTACAA
CCCCGTTTCTGAACTGGCGGGTGCACTGAAATCCCCGAAGCAGAAGCATTTTCCTCATCTGTTGAATAACGAGATAGGCG
CGTTTCTGCGCGCGTTGTGTGGCTATAGCGGCAGTAAGATGACTCAGTACGCCACGCGGTTGCTGATGCTGACAGGGACG
CGAACTATTGAGTTACGCGCTGCGGAGTGGCGTGAGTTCGATTTAAGTAAAGGACTCTGGGAGATCCCCGAAGGGCGCAT
GAAGATGCGGCGTAAGCATTCGGTGCCGCTGTCGCGCCAGGCTGTTGAGTTGCTGGAAGAGATCCAGCAGCTCACCGGGC
GCGGGAAGTATGTGTTTCCGGGCAGGAGCAATGCCGGTAAGCCGATGAGTGAAGCCACGATTAATCAGGTGATCAAACGG
GTTGGCTATGATGGCCGGGCAACCGGACATGGGTTCCGGCATACCATGAGCACGGTTTTGCATGAGCAGGGGTATAACTC
TGCGTGGATTGAAGTGCAGCTTGCACATGTGGACAAGAATTCGATTCGCGGGACGTACAACCATGCGCAGTACCTGGATG
GGCGGCGGGAGATGTTGCAGTGGTATGCGGATTATTTGGATGGGTTGCGGGATGGGGGTAATCAAAAGGGATAG

Protein sequence :
MKLNVRQIETAKPKDKAWKLADGGGLYLEIFPTGGKSWRLKYRFAGKEKRVVFGLYPAVTLAQARGKREDAKRILAAGGD
PGAAKQEAKQAKILAVNNNFEAMAREWHGTKRANWSQGYADDILEYLRKDIFPHIGKMPVTEITPMLMLAVLRKMEQRGV
LDKLKKTRQACSQIYVYAIVTGRAEYNPVSELAGALKSPKQKHFPHLLNNEIGAFLRALCGYSGSKMTQYATRLLMLTGT
RTIELRAAEWREFDLSKGLWEIPEGRMKMRRKHSVPLSRQAVELLEEIQQLTGRGKYVFPGRSNAGKPMSEATINQVIKR
VGYDGRATGHGFRHTMSTVLHEQGYNSAWIEVQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYLDGLRDGGNQKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 3e-123 61
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-117 60
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-117 60
int ACU09430.1 integrase Not tested LEE Protein 3e-117 60
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-117 60
int CAC39282.1 integrase Not tested LPA Protein 5e-117 60
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-117 60
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 7e-116 60
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-116 60
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 7e-116 60
int AAD44730.1 Int Not tested SHI-2 Protein 9e-116 59
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 2e-116 58
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-73 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 4e-69 42
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 4e-69 42
unnamed AAT96071.1 site-specific recombinase Not tested T-PAI Protein 2e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_1012 YP_004114892.1 integrase family protein VFG0783 Protein 2e-117 60
Pat9b_1012 YP_004114892.1 integrase family protein VFG0598 Protein 3e-116 60