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Name : Pat9b_1012 (Pat9b_1012) Accession : YP_004114892.1 Strain : Pantoea sp. At-9b Genome accession: NC_014837 Putative virulence/resistance : Unknown Product : integrase family protein Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0582 EC number : - Position : 1148136 - 1149329 bp Length : 1194 bp Strand : + Note : PFAM: integrase family protein; KEGG: eta:ETA_24330 prophage integrase DNA sequence : ATGAAGCTCAACGTCCGTCAAATCGAGACTGCCAAGCCGAAAGACAAAGCCTGGAAACTGGCTGACGGCGGTGGTCTGTA CCTCGAAATCTTCCCCACTGGTGGTAAAAGCTGGCGGCTGAAATACCGCTTTGCAGGAAAAGAAAAGCGCGTGGTGTTTG GCCTCTATCCTGCGGTTACGCTGGCGCAGGCGCGCGGAAAGCGCGAAGACGCGAAAAGGATACTCGCAGCCGGTGGTGAT CCCGGCGCGGCCAAGCAGGAAGCGAAGCAGGCCAAAATCCTCGCGGTTAACAACAACTTTGAAGCGATGGCGCGGGAATG GCATGGGACAAAGCGGGCTAACTGGTCGCAAGGCTATGCTGACGACATTCTGGAATACCTGCGCAAAGATATTTTTCCTC ATATCGGCAAAATGCCGGTCACTGAAATCACACCGATGCTGATGCTGGCGGTGCTGCGGAAAATGGAACAACGCGGCGTG CTGGATAAGCTGAAGAAAACCCGCCAGGCGTGTAGTCAGATTTATGTCTACGCCATTGTTACTGGCAGGGCGGAGTACAA CCCCGTTTCTGAACTGGCGGGTGCACTGAAATCCCCGAAGCAGAAGCATTTTCCTCATCTGTTGAATAACGAGATAGGCG CGTTTCTGCGCGCGTTGTGTGGCTATAGCGGCAGTAAGATGACTCAGTACGCCACGCGGTTGCTGATGCTGACAGGGACG CGAACTATTGAGTTACGCGCTGCGGAGTGGCGTGAGTTCGATTTAAGTAAAGGACTCTGGGAGATCCCCGAAGGGCGCAT GAAGATGCGGCGTAAGCATTCGGTGCCGCTGTCGCGCCAGGCTGTTGAGTTGCTGGAAGAGATCCAGCAGCTCACCGGGC GCGGGAAGTATGTGTTTCCGGGCAGGAGCAATGCCGGTAAGCCGATGAGTGAAGCCACGATTAATCAGGTGATCAAACGG GTTGGCTATGATGGCCGGGCAACCGGACATGGGTTCCGGCATACCATGAGCACGGTTTTGCATGAGCAGGGGTATAACTC TGCGTGGATTGAAGTGCAGCTTGCACATGTGGACAAGAATTCGATTCGCGGGACGTACAACCATGCGCAGTACCTGGATG GGCGGCGGGAGATGTTGCAGTGGTATGCGGATTATTTGGATGGGTTGCGGGATGGGGGTAATCAAAAGGGATAG Protein sequence : MKLNVRQIETAKPKDKAWKLADGGGLYLEIFPTGGKSWRLKYRFAGKEKRVVFGLYPAVTLAQARGKREDAKRILAAGGD PGAAKQEAKQAKILAVNNNFEAMAREWHGTKRANWSQGYADDILEYLRKDIFPHIGKMPVTEITPMLMLAVLRKMEQRGV LDKLKKTRQACSQIYVYAIVTGRAEYNPVSELAGALKSPKQKHFPHLLNNEIGAFLRALCGYSGSKMTQYATRLLMLTGT RTIELRAAEWREFDLSKGLWEIPEGRMKMRRKHSVPLSRQAVELLEEIQQLTGRGKYVFPGRSNAGKPMSEATINQVIKR VGYDGRATGHGFRHTMSTVLHEQGYNSAWIEVQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYLDGLRDGGNQKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AFX83955.1 | integrase | Not tested | SE-PAI | Protein | 3e-123 | 61 |
| int | ACU09430.1 | integrase | Not tested | LEE | Protein | 3e-117 | 60 |
| intL | NP_290239.1 | integrase for prophage 933L and the LEE pathogenicity island | Not tested | LEE | Protein | 4e-117 | 60 |
| int | AAC31482.1 | CP4-like integrase | Not tested | LEE | Protein | 3e-117 | 60 |
| ECs4534 | NP_312561.1 | integrase | Not tested | LEE | Protein | 4e-117 | 60 |
| int | CAC39282.1 | integrase | Not tested | LPA | Protein | 5e-117 | 60 |
| aec33 | AAW51716.1 | Int | Not tested | AGI-3 | Protein | 5e-117 | 60 |
| S4835 | NP_839238.1 | integrase | Not tested | SHI-2 | Protein | 7e-116 | 60 |
| int | AAD54663.1 | Sai integrase | Not tested | SHI-2 | Protein | 5e-116 | 60 |
| SF3698 | NP_709437.1 | integrase | Not tested | SHI-2 | Protein | 7e-116 | 60 |
| int | AAD44730.1 | Int | Not tested | SHI-2 | Protein | 9e-116 | 59 |
| ESA_03025 | YP_001439090.1 | hypothetical protein | Not tested | Not named | Protein | 2e-116 | 58 |
| STY4821 | NP_458899.1 | integrase | Not tested | SPI-10 | Protein | 2e-73 | 44 |
| SESS1296_03598 | AFO66301.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 4e-69 | 42 |
| SESS1635_03816 | AFO66367.1 | bacteriophage integrase | Not tested | SESS LEE | Protein | 4e-69 | 42 |
| unnamed | AAT96071.1 | site-specific recombinase | Not tested | T-PAI | Protein | 2e-59 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Pat9b_1012 | YP_004114892.1 | integrase family protein | VFG0783 | Protein | 2e-117 | 60 |
| Pat9b_1012 | YP_004114892.1 | integrase family protein | VFG0598 | Protein | 3e-116 | 60 |
