Gene Information

Name : Pat9b_1002 (Pat9b_1002)
Accession : YP_004114882.1
Strain : Pantoea sp. At-9b
Genome accession: NC_014837
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 1138274 - 1138960 bp
Length : 687 bp
Strand : +
Note : KEGG: spe:Spro_1158 putative ABC transporter ATP-binding protein YbbA; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGCCAGCGGAAAACATTGTTGAAGTTCATCATCTTACTAAGTCCGTCGGTCAGGGAGAGCATCAGCTGACCATCCTTAC
CGGAGTTGAGCTGGTTGTCAAACCCGCCCAGACCATTGCGCTGATTGGCGAGTCCGGCTCGGGCAAATCTACCCTGTTGG
GCATCCTCGCCGGGCTGGACGATGGCAGCAGCGGTGAAGTGCATTTGTTGGGCGAGCCATTACATGCAATGGATGAGGAG
CAGCGGGCGGCGCTGCGCGCGCGGGAAGTCGGCTTTGTCTTTCAATCTTTTATGCTGGTGCCGACGCTGAATGCGCTGGA
GAACGTCCAGTTGCCAGCGCTGTTGCGTGGTGTCAGCGATCGTGAAAGCCGCGATCAGGCGGTGGAATTACTGACGCAGC
TCGGCTTAAAAGCGCGTCTGCACCATCTTCCCGCCCAGCTTTCCGGTGGCGAGCAGCAGCGAGTGGCGCTGGCTCGTGCC
TTTAATGGGCGTCCCGGCCTGTTGTTTGCCGATGAACCGACCGGCAACCTCGACCGTCAGACCGGGGATCGCATCGCCGA
TCTGCTGTTCTCGCTCAACCGTGATTTTGCCACCACCCTCATTCTGGTCACGCATGATGAACAACTGGCAGCGCGTTGCG
ACCGTCGCCTGCGACTGCGTGACGGTAAATTGTGGGAGGAGTCATGA

Protein sequence : 
MPAENIVEVHHLTKSVGQGEHQLTILTGVELVVKPAQTIALIGESGSGKSTLLGILAGLDDGSSGEVHLLGEPLHAMDEE
QRAALRAREVGFVFQSFMLVPTLNALENVQLPALLRGVSDRESRDQAVELLTQLGLKARLHHLPAQLSGGEQQRVALARA
FNGRPGLLFADEPTGNLDRQTGDRIADLLFSLNRDFATTLILVTHDEQLAARCDRRLRLRDGKLWEES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-30 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-30 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-30 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Pat9b_1002 YP_004114882.1 ABC transporter-like protein NC_008702.1.4606598. Protein 8e-30 46
Pat9b_1002 YP_004114882.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-36 43
Pat9b_1002 YP_004114882.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-38 43