Gene Information

Name : Selin_0386 (Selin_0386)
Accession : YP_004111698.1
Strain : Desulfurispirillum indicum S5
Genome accession: NC_014836
Putative virulence/resistance : Virulence
Product : sigma-54 factor interaction domain-containing protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 412802 - 414184 bp
Length : 1383 bp
Strand : +
Note : KEGG: nhl:Nhal_3545 sigma-54 factor interaction domain-containing protein; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase

DNA sequence : 
ATGGGTGATTTTGATCCCGGCCAATACCGTATTCTGCTGGTGGAGGATGACGAGAGCCTCTCTCAGCTGCTGCTGGATGA
AATATCCGACGCAGGCTACCAGGTGTTCCGCGAAATGACCGCGGAGCAGGGGTTGCGCATGGTGCGGGCTCAGGCAGTGG
ATCTGGTGATCAGCGACCTGCGTCTGCCGGGTATGACTGGGCTGGAGTTTCTTGAGGCGCTCCAGAGGCAGGACACCCCA
CCAGCCTGTATTGTGATCACGGGGTTCGGGACCATCAGCCAGGCCGTGCAGGCTCTCAAAGCCGGAGCCGATGATTTCCT
GACCAAACCACTGCACCTGGAGCACCTGATGCTCAGTGTCCGGCGGGTTCTGGGAAATCGCCTGCTGCGTCAGGAGCTGG
CCGCACTGCGCCTGGCTCCGACGCAGGAGAGCTTTCATGGCATGGTTGGCCACAGCGATCCCATGACCCACCTCTATGCC
CAGATTCGCCAGGTAGCCAGGGCATATGGGCCGGTACTGATAACCGGCGAAAGCGGCGTAGGCAAGGAGCTGGTGGCGCG
GGCCATTCACCGGGAAAGTGAGCGCCGCCAAGAGGCCTTTGTGGCCATTAACTGTGCGGGAATACCGGAAAATCTCATGG
AAAGTGAGTTTTTTGGTCATGTTGCCGGTTCTTTTACCGGAGCGCGCTCCGAGCGCCGCGGACTGATCTCAGATGCCCAT
GGCGGAACCCTGCTGCTGGATGAAATCGGCGAGATGCCCTTGCCTTTGCAGGCCAAGCTGCTGCGGGTCATTCAGGAAGG
GGTGCTGCGACCGGTGGGGGGGAACCGGGAGGAGAAAGTCGATGTGCGGGTGCTGGCGGCTACCAACCGTGACCTTGAAG
AGGAGATGCGTCAGGGTCGCTTTCGCGAAGACCTCTTCTACCGCCTGGAGACCTTCGCGCTGCACGTTCCGCCCCTGCGG
GACCGGGGTGATGATCTGGAACTCCTGGCGGCCAGATTCCTGGAACAGATGGAGCAGCGCCTGGGGCGTCGCTTCCAGGG
ATTCAGCGAAGAGGCGCTCAGCAAACTGCGGCAGTATCCTTTTCCGGGAAATGTGCGCGAGCTGCAAAATGCCATGGAGC
GAGCAGCCACTTTCTGTCGCGGAAGCCGGATTCAGCCGCAGCATCTGCCCGCCCGTATTCGGCAGTACCGCAGCGGCAGC
GATCCCTCTGCCCCTTTTCCCATTGCCCTGACGGGCGAGGACGGTTTTCTGAGTCTGGAAGAACTGCAGCGTCGCTACAT
ACAGTATGTGGTGGAGCAGTTGGGGGGCAATAAGCGGCGGGCCGCCAGCGTGCTGGGCATCGGACGGCGAACCCTCTATC
GCAAACTGGGTGTGGAGGAGTAG

Protein sequence : 
MGDFDPGQYRILLVEDDESLSQLLLDEISDAGYQVFREMTAEQGLRMVRAQAVDLVISDLRLPGMTGLEFLEALQRQDTP
PACIVITGFGTISQAVQALKAGADDFLTKPLHLEHLMLSVRRVLGNRLLRQELAALRLAPTQESFHGMVGHSDPMTHLYA
QIRQVARAYGPVLITGESGVGKELVARAIHRESERRQEAFVAINCAGIPENLMESEFFGHVAGSFTGARSERRGLISDAH
GGTLLLDEIGEMPLPLQAKLLRVIQEGVLRPVGGNREEKVDVRVLAATNRDLEEEMRQGRFREDLFYRLETFALHVPPLR
DRGDDLELLAARFLEQMEQRLGRRFQGFSEEALSKLRQYPFPGNVRELQNAMERAATFCRGSRIQPQHLPARIRQYRSGS
DPSAPFPIALTGEDGFLSLEELQRRYIQYVVEQLGGNKRRAASVLGIGRRTLYRKLGVEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-62 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-62 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Selin_0386 YP_004111698.1 sigma-54 factor interaction domain-containing protein BAC0467 Protein 3e-74 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Selin_0386 YP_004111698.1 sigma-54 factor interaction domain-containing protein VFG1214 Protein 2e-74 44
Selin_0386 YP_004111698.1 sigma-54 factor interaction domain-containing protein VFG0116 Protein 1e-62 42