Gene Information

Name : Selin_2210 (Selin_2210)
Accession : YP_004113486.1
Strain : Desulfurispirillum indicum S5
Genome accession: NC_014836
Putative virulence/resistance : Virulence
Product : ATPase, FliI/YscN family
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : -
Position : 2440281 - 2441600 bp
Length : 1320 bp
Strand : +
Note : TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: aoe:Clos_1482 flagellar protein export ATPase FliI; SMART: AAA ATPase

DNA sequence :
ATGCCCCTTGATGTGGAAAAGCTCAAGCACCGCATTGACCATACCCGCACTGTGAAACTCATCGGCAAGGTCACCAAGAT
CATCGGCCTGCTCATCGAATCCCGGGGGCCCGCCTCCTCCATCGGAGACCTGTGCCTCATCCATCCCATTAACCCCCGCG
AACCCCTGGTGACGGCGGAAGTTGTCGGGTTTCGCGATGATGTTATCCTGTTGATGCCCCTGGGGGATCTGGCGGGAATC
GGGCCAGGCAGTCGCGTCGAAGCCATGAAGGAGGTCTTCATGGTGCCCGTGGGTGACGCTTTGGTTGGCCGTGTGCTCAA
CGGCTTGGGCATGCCCATTGACGAGCAGCCTGAGCCGGAGTGCAAACGCCTCTATCCCGTTCAGGCGGCGCCGCCGAATC
CCTTCACCCGCAAGCGCATTGATACCCCCATCGGCACTGGAGTGCGCGCCATTGACGGCCTGCTGACCTGGGGCAAGGGT
CAGCGGGTGGGAATCTTTGCCGGCTCGGGCGTGGGCAAGTCCACACTGCTGGGGATGATTGCCAAGAACAGTCAGGCTGA
CATCAACGTCATTGCCCTGATAGGCGAGCGTGGTCGCGAGGTGCGGGAGTTCATCGAACGCGATCTTGGCCCCGACGGCC
TGGCCCGCAGTGTGATTGTGGTCGCCACCAGTGATCAGCCGGCGCTGGTCCGGCGGCAGGGAGCCTATGTGGCCACAGCG
ATCGCCGAATACTTTCGCGATCAGGGAAAGAACGTCATGTTCATGATGGACTCCATCACGCGCTTCTGCATGGCCCAGCG
CGAAATCGGGCTGGCGGTGGGTGAGCCGCCGACGACCAAGGGGTATACCCCCTCGGTTTTTGCCCTGCTGCCAAAGCTGA
TGGAGCGTACTGGAACCGGAACTGGTGAAGGCAGCATCTCCGCTCTCTACACGGTGCTGGTGGATGGCGACGATATTACC
GAGCCGGTGGCCGACGCATCGCGATCTATCCTGGATGGTCATATCATGCTTTCGCGTAAGCTGGCTTCCCGAAACCACTT
TCCGGCCATCGATGTGCTGGGCAGCGCCTCCCGCGTCTTTGGCGAAATCACCTCAGGGGAGCATCAGGAGCTGGCGGCCA
AGTTGCGCAACCTGATGGCGGTCTACGGAGACGCTGAAGACCTGATCAACATCGGAGCCTACAGCAAGGGCACCAACAAG
GAGATCGACCGCGCGGTCAGCCGCATGGGAGCCATCAACAGCTTCCTGCGTCAGGCGGTCAACGAGTCAGAGGATTTCGG
CAATATCTGTGTCCTGATGAAACAGACTGTGGGTGAATAG

Protein sequence :
MPLDVEKLKHRIDHTRTVKLIGKVTKIIGLLIESRGPASSIGDLCLIHPINPREPLVTAEVVGFRDDVILLMPLGDLAGI
GPGSRVEAMKEVFMVPVGDALVGRVLNGLGMPIDEQPEPECKRLYPVQAAPPNPFTRKRIDTPIGTGVRAIDGLLTWGKG
QRVGIFAGSGVGKSTLLGMIAKNSQADINVIALIGERGREVREFIERDLGPDGLARSVIVVATSDQPALVRRQGAYVATA
IAEYFRDQGKNVMFMMDSITRFCMAQREIGLAVGEPPTTKGYTPSVFALLPKLMERTGTGTGEGSISALYTVLVDGDDIT
EPVADASRSILDGHIMLSRKLASRNHFPAIDVLGSASRVFGEITSGEHQELAAKLRNLMAVYGDAEDLINIGAYSKGTNK
EIDRAVSRMGAINSFLRQAVNESEDFGNICVLMKQTVGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscN AAO18044.1 LscN Virulence TTSS locus Protein 7e-109 55
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-99 52
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-99 52
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 5e-102 52
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 5e-102 52
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 7e-102 52
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-100 52
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-100 51
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 1e-100 51
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 9e-89 51
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-101 50
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-88 50
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 6e-88 50
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 6e-88 50
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-88 50
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-83 49
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 3e-83 49
unnamed AAL06369.1 EscN Virulence LEE Protein 3e-85 49
escN YP_003236088.1 translocator EscN Virulence LEE Protein 6e-86 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-85 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-85 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 2e-85 48
escN CAI43874.1 EscN protein Virulence LEE Protein 1e-85 48
escN AAK26715.1 EscN Virulence LEE Protein 5e-85 48
escN AAL57542.1 EscN Virulence LEE Protein 5e-85 48
escN AAC38383.1 EscN Virulence LEE Protein 3e-85 47
ECs4568 NP_312595.1 EscN Virulence LEE Protein 3e-85 47
escN AAC31513.1 L0034 Virulence LEE Protein 2e-85 47
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 2e-85 47
escN NP_290268.1 hypothetical protein Virulence LEE Protein 3e-85 47
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 1e-85 47
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 9e-78 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 4e-75 46
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-83 46
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 2e-78 46
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 2e-78 46
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-77 45
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-77 44
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 2e-77 44
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-77 44
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-82 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 5e-69 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 3e-73 43
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 3e-73 43
invC AAS66861.1 InvC Not tested SSR-2 Protein 5e-73 43
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 2e-69 42
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-68 41
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 6e-68 41
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-68 41
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 6e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG0390 Protein 4e-109 54
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG0048 Protein 3e-110 54
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG0192 Protein 4e-112 52
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG2144 Protein 2e-106 52
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG0515 Protein 1e-88 50
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG1254 Protein 8e-93 48
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG2331 Protein 9e-92 47
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG0812 Protein 1e-85 47
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG0730 Protein 2e-85 47
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG2499 Protein 1e-88 47
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG2459 Protein 7e-76 44
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG1778 Protein 8e-75 43
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG1008 Protein 3e-72 42
Selin_2210 YP_004113486.1 ATPase, FliI/YscN family VFG0555 Protein 3e-68 41