Gene Information

Name : Selin_1996 (Selin_1996)
Accession : YP_004113275.1
Strain : Desulfurispirillum indicum S5
Genome accession: NC_014836
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2190084 - 2190947 bp
Length : 864 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: neu:NE0155 integrase catalytic subunit

DNA sequence : 
ATGATCAAAGCACTTCAGCCTGAGTATAACCTGCGCCTGCTGTGTGAAGTCCTCGATGTATCCGTCAGTGGGTACTATTC
ATGGCGCACACGGCCAGTGTCAGAGCGTCGCAAGGAAAACCTGCGGCTCACGGTTGAAATCAAAGCGGCTCACGAGAAAA
CCCGGAAGACATATTCTCCGGAGCGCCTACAACAGGAGCTGATGGCAAATGGAATACATGTCAGTCTCTACCGGATCAGG
AAAGTACGCAAGATGCATGGAATAGTGTGCAAACAGAAGCAGAAGTTCAAGGCAACCACCAACTCGAACCACAAGCTGCC
AGTGGCACCAAACATACTGAATCAGGAGTTTACCGCCAGTGCCCCTAACCAGGCGTGGCTTACCGACATCACCTATGTTC
CAACAGATGAAGGGTGGCTCTACCTTGCTGGTCACAAGGATCTCTACAGTAAAAAGCTGGTGGGGTATGCTATGTCTGAA
CGTATGACCAAGAACCTTGTCATGCAGTCACTGCAGCATGCGGTGGAGCTGGAGCGTCCCGGCAAGGGGCTCATTCACCA
CAGCGATCGTGGCAGCCAATATTGCTCAAATGAGTTCAGGCAACAATTGGAGCGTTATGGCATGCAATCTTCCATGAGCC
GTCGGGGAAATTGCTATGACAATGCACCAATTGAGAGTTTCTGGGGAATACTGAAGACAGAGTTGATCTATCACAAGCGC
TATGCGACACGCCAAGAGGCTATACGTAATATAACCGAGTACATTGAAGTGTTCTATAACAGACAAAGGATGCAGCGGGG
ACTTGGGTATCTCTCACCTGCTGCATTCGAACAAAAATATTACAAAGAGAGAAAAACCGCATAA

Protein sequence : 
MIKALQPEYNLRLLCEVLDVSVSGYYSWRTRPVSERRKENLRLTVEIKAAHEKTRKTYSPERLQQELMANGIHVSLYRIR
KVRKMHGIVCKQKQKFKATTNSNHKLPVAPNILNQEFTASAPNQAWLTDITYVPTDEGWLYLAGHKDLYSKKLVGYAMSE
RMTKNLVMQSLQHAVELERPGKGLIHHSDRGSQYCSNEFRQQLERYGMQSSMSRRGNCYDNAPIESFWGILKTELIYHKR
YATRQEAIRNITEYIEVFYNRQRMQRGLGYLSPAAFEQKYYKERKTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-74 59
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-74 59
unnamed AAF09022.1 unknown Not tested SHI-O Protein 2e-74 58
unnamed AAF09030.1 unknown Not tested SHI-O Protein 9e-75 58
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 9e-75 58
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 9e-75 58
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 1e-74 58
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 7e-75 58
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 6e-73 58
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-51 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-51 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-51 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Selin_1996 YP_004113275.1 integrase catalytic subunit VFG1706 Protein 4e-75 58