Gene Information

Name : Selin_1911 (Selin_1911)
Accession : YP_004113194.1
Strain : Desulfurispirillum indicum S5
Genome accession: NC_014836
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1132
EC number : -
Position : 2088416 - 2090209 bp
Length : 1794 bp
Strand : -
Note : KEGG: dap:Dacet_1604 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase

DNA sequence : 
ATGAAATCGCCTTTGGCCCATGGAATGCTGAGCAAACCCGGTATCTGGGGAGTGATGGCACCCGTCATGGGGGGAATTCG
CGGTGCCATGGCCCTGGCGGCGCTCGGTTCCATGGCAACCATCGGTGCTGTCGTGGTCCTGGCGCTGGTGGTGCATGAAC
TGCTGCAGAGTGATCCCCAGCCGGCACGGTGGATGGTGCTGGCGCTGCTACTGACGGCGGTGGCGCTCATCCTGCGCGGG
GCGAGCTTTACCCTGTCTCACCTGGTGGCATTCCGGCTGGAGACAATGCTGCGCACTGAGCTGGCGGAGCACCTGGCCCG
TGTTCCACTGGGATTTCTTCTCTCCAGCGGCTCCGGTGCTTTGACCAAAGTCATTCAGGATGATGTGAAAGACCTGCATG
GTTTCGTGGCAGACAGCACCCCTCTGCTGGGGCGCTCGGTTACCGCTCCCGTTGTCACCCTGGTGGTGCTGTTGGTCATC
GACTGGCGGCTGGCTCTGGTGGCGCTGGGGGTGCTGCTGGCTGGTGTCCTGGTGCTGCGCCTGGCCATGCGGGATCACAG
AGAGCTTTCCGAACGCTATGACGCGGAACGGGAACGCATCAACGGGGCGGTTATCGAGTTTGTGCAGGCCATGCCGGTGG
TGAGGACGTTCGATGACGGCAGTACCTCGTTTCGACGCTATCATCAGGCCTTGAGCGCCTTCCATGGTGTCCTGGCGCAC
TGGGTGGAGGCGTCAAGCACCAGCGGACGTCTTGCCATGATCGTGCTGAGTCCGCTGCCCACACTCATAGCCCTGCTGGT
GGCAGGCAGCCTGCTCTTCGCTTCCGGCAGTCTGAGTTTTGCGGTCTGGGTGGGGGTGCTGCTGATCGGTACAGGTATGG
CGGAGGCGCTGATTCCGTTGATGTGGCTGAGTGGTTTTATCCGCAAAGCCAATGGCAGTGCCTTGCGTATTCAGTCGCTG
CGATCCGAGCCGCCTCTGCCGGAGCCGCTGTCCGCGCAGCAGCCTGTGGGCAGCGATATTGTCTTTGATTCGGTGAGCTT
CGCCTATGGAGAGCGATCCGGTGATGTTCTGCACGAGGTGAGTTTTTGTGTGCCTGCCGGCACGGTGACGGCGCTGGTGG
GCCCTTCGGGCTCCGGCAAGAGCACCGTGGCGCGTCTTCTGCCACGCTTCTGGGATGTGCGCGCGGGTGCGATCAGGATT
GGTGGTGTGGATGTGCGCCACATGAGCGCCCAGACCCTGATGTCCCATGTGGCATTTGTCTTCCAGGATACGTTCCTGTT
TCACGATACCATTGCCGACAATATTCGCCTGGGCCGTCCCGACGCTACCATGGCCGAAGTGGAACGGGCGGCTCGGGCCG
CTCAGGCCCATGATTTCATTGTGCAGCTGCCGGAAGGCTATGAAACCAGGGCGGGAGACCGTGGTGGTCGCCTTTCCGGT
GGGCAGCGTCAGCGTATCACCATTGCCCGTGCCATCTTGCAGGATCGTCCCATCGTGGTGCTCGACGAGGCTACGGCTTT
TGCGGACCCCGAAAATGAAGTAGCCCTGGTCAGCGCTCTGGCACACCTGATGCGCGGACGGACGGTTATCCTTATCGCCC
ATCGCCTGCCCACGGTCCAGGATGCCGATCAGATTCTCGTCCTTGAGGGTGGCTGTGTCGTCGAGCGGGGCTGTCACGGA
GAGCTCCTGGCTCTTAAGGGCCTCTATCGGCGGCTCTGGAATACCTATGAGCAGGCTCAGGGCTGGTCCCTGCAAAAAAT
CCGGCCCACAGGAGGCACCCATGACACCCACTGA

Protein sequence : 
MKSPLAHGMLSKPGIWGVMAPVMGGIRGAMALAALGSMATIGAVVVLALVVHELLQSDPQPARWMVLALLLTAVALILRG
ASFTLSHLVAFRLETMLRTELAEHLARVPLGFLLSSGSGALTKVIQDDVKDLHGFVADSTPLLGRSVTAPVVTLVVLLVI
DWRLALVALGVLLAGVLVLRLAMRDHRELSERYDAERERINGAVIEFVQAMPVVRTFDDGSTSFRRYHQALSAFHGVLAH
WVEASSTSGRLAMIVLSPLPTLIALLVAGSLLFASGSLSFAVWVGVLLIGTGMAEALIPLMWLSGFIRKANGSALRIQSL
RSEPPLPEPLSAQQPVGSDIVFDSVSFAYGERSGDVLHEVSFCVPAGTVTALVGPSGSGKSTVARLLPRFWDVRAGAIRI
GGVDVRHMSAQTLMSHVAFVFQDTFLFHDTIADNIRLGRPDATMAEVERAARAAQAHDFIVQLPEGYETRAGDRGGRLSG
GQRQRITIARAILQDRPIVVLDEATAFADPENEVALVSALAHLMRGRTVILIAHRLPTVQDADQILVLEGGCVVERGCHG
ELLALKGLYRRLWNTYEQAQGWSLQKIRPTGGTHDTH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtP YP_853073.1 inner membrane ABC-transporter Not tested PAI IV APEC-O1 Protein 6e-92 57
irp6 YP_001006813.1 lipoprotein inner membrane ABC-transporter Not tested HPI Protein 4e-92 57
ybtP NP_669704.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 4e-92 57
ybtP NP_993009.1 permease and ATP-binding protein of yersiniabactin-iron ABC transporter Virulence HPI Protein 4e-92 57
irp6 YP_002346904.1 lipoprotein inner membrane ABC transporter Not tested HPI Protein 3e-92 57
ybtP CAA21388.1 - Virulence HPI Protein 3e-92 57
irp6 CAB46573.1 lipoprotein inner membrane ABC-transporter, Irp6 Virulence HPI Protein 1e-91 57
ybtP YP_070126.1 lipoprotein inner membrane ABC-transporter Virulence HPI Protein 8e-92 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Selin_1911 YP_004113194.1 ABC transporter-like protein BAC0432 Protein 2e-92 57