Gene Information

Name : Selin_1494 (Selin_1494)
Accession : YP_004112783.1
Strain : Desulfurispirillum indicum S5
Genome accession: NC_014836
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1627239 - 1628435 bp
Length : 1197 bp
Strand : -
Note : PFAM: integrase family protein; KEGG: ypy:YPK_0061 integrase family protein

DNA sequence :
ATGCCAGCAGTTACGACACCTTTGACTGTCAAGCAAATTGATAGCGCAAAGCCGAAGGATAAGCAGTATCGTCTATATGA
TGGAGGTGGCCTGGTATTTACCATCAAACCCAATGGTGGGAAATACTGGATAATGCGCTATCGGTATGAAAAGAAGTCCC
ACGAGCTACACCTTGGCACTTATCCTGAAGTACCACTGTCGAAAGCCCGCGAATTTCGCGAGGAGGTACGGGTGCAGGTG
GCAGCAGGGATTGACCCGAAAAGGTATCGCGAAGAAGCAGAAAATCAGTTACTGCGACAAAAAGAGGGCAGCTTTGAAAG
TGTTGCCAGGTCATGGTGTGAAATTCAAAAACCCCGCTGGACAGAGCGTCACGGAAGTGATGTCATAAATTCACTGGAGA
CCAATGTTTTTCCTTATATAGGTTCCCGCCCAATTTATGAGTTAAAGCCTCGTGAGTTGCTCGATGTGGTCAAGGTCATT
GACGATAGGGGGGCCAGTGAAATAGCCAGACGGGTTTTGCAGCGTATCTCAGCGATATACGACTATGCCTTTGCTCATGG
CCTCGTTGAGCTGAATCCAACTGCTGGCCTGGTGAAGGGTCTGAAGCCACAAAAGAAACAGAATTTTGCCGCTCTGTCTG
CTGAGGAAGTTCCTGAATTGGTTCGAGCTATTGAGGGCTACCATGGCCACCCAATCACTAAGCTTGCATTGAAACTTTGC
TTGCTGACAGCAAGTAGGACCAATGAAATTCGGTTTGCCAGCTGGCAGGAGTTTGATCTTGATAATACACTCTGGTGCAT
TCCGGCTGAGCGAATGAAAATGCGACGGGATCACCGAGTACCCCTATCCCGGCAAGCGGTGGCTGTGGTGGAAGAGCTTA
TTCAGTATTCGGGCAAAAACAAGTACCTGTTCCCCAATCAAAACAAACCCCATACCCCTATCACAGAAAACACCATGCTC
TATGCCCTGTACCGCATGGGCTTCCACAAGCGCTCAACCGTCCACGGCTTCCGGACGCTATTTAGCACCATTGCCAATGA
AAAGTCAGACTTCAGTGCCGATGCCGTAGAGCGGCAACTGGCACACCAGGAACAAAACAGGATCCGGGCGGCGTATCACC
GGGCTGATTATCTGGATGAAAGGCGGGAGTTAATGCAGTGGTGGGCTGATTATTTGGATGGGCAAAACAATATATAG

Protein sequence :
MPAVTTPLTVKQIDSAKPKDKQYRLYDGGGLVFTIKPNGGKYWIMRYRYEKKSHELHLGTYPEVPLSKAREFREEVRVQV
AAGIDPKRYREEAENQLLRQKEGSFESVARSWCEIQKPRWTERHGSDVINSLETNVFPYIGSRPIYELKPRELLDVVKVI
DDRGASEIARRVLQRISAIYDYAFAHGLVELNPTAGLVKGLKPQKKQNFAALSAEEVPELVRAIEGYHGHPITKLALKLC
LLTASRTNEIRFASWQEFDLDNTLWCIPAERMKMRRDHRVPLSRQAVAVVEELIQYSGKNKYLFPNQNKPHTPITENTML
YALYRMGFHKRSTVHGFRTLFSTIANEKSDFSADAVERQLAHQEQNRIRAAYHRADYLDERRELMQWWADYLDGQNNI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAC39282.1 integrase Not tested LPA Protein 2e-74 43
int AAD44730.1 Int Not tested SHI-2 Protein 2e-74 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-74 43
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 7e-70 43
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-71 43
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-71 43
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-71 43
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 1e-71 43
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 1e-71 43
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-71 43
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 5e-71 43
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-71 43
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-71 43
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-71 43
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-71 43
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-71 43
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-71 43
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-72 43
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-70 43
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-72 43
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 4e-71 43
int AAK00456.1 Int Not tested SHI-1 Protein 2e-65 43
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-73 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-73 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-75 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-75 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-75 42
int ACU09430.1 integrase Not tested LEE Protein 2e-75 42
int CAC81896.1 integrase Not tested LEE II Protein 8e-65 42
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-70 42
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-68 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 9e-74 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 9e-74 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 7e-74 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 5e-72 41
intA AAB00935.1 integrase A Not tested vap locus Protein 8e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Selin_1494 YP_004112783.1 integrase family protein VFG0626 Protein 5e-72 43
Selin_1494 YP_004112783.1 integrase family protein VFG1693 Protein 2e-71 43
Selin_1494 YP_004112783.1 integrase family protein VFG0783 Protein 1e-75 42
Selin_1494 YP_004112783.1 integrase family protein VFG0598 Protein 4e-74 42