|
Name : Selin_1283 (Selin_1283) Accession : YP_004112574.1 Strain : Desulfurispirillum indicum S5 Genome accession: NC_014836 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 1415628 - 1417109 bp Length : 1482 bp Strand : - Note : TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: gpb:HDN1F_34690 general secretion pathway protein E; SMART: AAA ATPase DNA sequence : ATGCCCTTACCCCAGAGATTACCCTTTGGATTTGCGAAACGCCATCAGCTCCTCTTACAGGAAGATGAAAACGGCGGCGT TCACGTCCTCTACCGTCAACCACCTGCACCGGCTGCTATCGCAGAAGTCCAGCGATTCGTCGGACAGCTGACCCCTTTTC TGCAGGTGGATGAGCAGGAGTTTTCTGCGGCCCTTTCCACGGCGTACCAGAACGACTCTTCCGCTGCCATGGAGATGGTG GAGGAGCTGGGTGACGATATGGATCTCGCCAGCCTGGCCGACTCTGTGCCTGAGACCGAAGACCTTCTGGAACAGGAAGA TAACGCCCCCATCATCCGTCTGATCAATGCCCTGCTCACGGAAGCCATACGGGAAAACGCTTCGGATATCCATATCGAGA CCTTTGAGCGCAACCTGATCGTGCGCTTTCGCATTGATGGCGTCCTGCGCGAGATGGTGCGGCCCAAGCGGGCCCTTGCG CCGCTGCTGACTTCGCGCATCAAGGTCATGGCCCGTCTCGATATCGCCGAAAAGCGCATCCCCCAGGATGGTCGCATCTC CCTGAAAGTCGGCGGCAAGGAAGTGGATGTGCGGGTATCCACCATGCCTTCCATTAACGGTGAACGCATCGTCCTGCGCC TGCTGGACAAACAGGCAGGACGCCTGGATCTGGCACAGCTGGGAATGTCCACGCAGAACGCGCGACTCCTCAACGACATC ATCCACAAGCCCCATGGCATTATCCTGATCACCGGACCCACCGGCTCCGGGAAAACCACGACACTCTACGCCATGCTGAC CCGACTCAACGACAAGAGTCGCAATATCCTCACCGTAGAAGACCCCATTGAATACAACCTCGAAGGCATCGGCCAGACCC AGGTGAACACCAAAATTGATATGACCTTCGCCCGCGGGCTGCGCGCCATACTGCGCCAGGATCCCGATGTGGTCATGGTC GGTGAAATCCGCGACCTGGAAACAGCGGAGATATCCATCCAGGCCAGTCTGACTGGCCACCTTGTCCTCTCGACCCTGCA CACCAACAGCGCTGCCGGAGCCATCACCCGCCTGCAGGATATGGGAATCGAGCCCTTTCTGCTCTCCTCCAGCATGCTCG GAGTACTGGCCCAACGACTGGTGCGCGTCCTGTGTAAACACTGCCGCGAAGCCTACGAGGCCAGCGAGGAGGAGTGCGCA CTTCTGCAGGTGAATGGCAGTCTGCAGGCTCCGGTCATTTATCGCGCCACTGGCTGCAAGGAGTGTAACCACCTTGGATA TCGCGGCAGAACAGGTATTTACGAGCTGATTACCTTTAACGACGAGCTGCGCACCATGGTGCACCGCCGCTCGTCGGAAC AGGAGCTGGAAGCCTATGCCCGCAAACACAGTGCCAGTATACGCGCTGATGGGGCCAGAAAAGTACTGGAGGGTGAGACC ACGCTGGAAGAAGTTCTGCGCGTCACCCTTGAGGACGGCTGA Protein sequence : MPLPQRLPFGFAKRHQLLLQEDENGGVHVLYRQPPAPAAIAEVQRFVGQLTPFLQVDEQEFSAALSTAYQNDSSAAMEMV EELGDDMDLASLADSVPETEDLLEQEDNAPIIRLINALLTEAIRENASDIHIETFERNLIVRFRIDGVLREMVRPKRALA PLLTSRIKVMARLDIAEKRIPQDGRISLKVGGKEVDVRVSTMPSINGERIVLRLLDKQAGRLDLAQLGMSTQNARLLNDI IHKPHGIILITGPTGSGKTTTLYAMLTRLNDKSRNILTVEDPIEYNLEGIGQTQVNTKIDMTFARGLRAILRQDPDVVMV GEIRDLETAEISIQASLTGHLVLSTLHTNSAAGAITRLQDMGIEPFLLSSSMLGVLAQRLVRVLCKHCREAYEASEEECA LLQVNGSLQAPVIYRATGCKECNHLGYRGRTGIYELITFNDELRTMVHRRSSEQELEAYARKHSASIRADGARKVLEGET TLEEVLRVTLEDG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 9e-142 | 62 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-142 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Selin_1283 | YP_004112574.1 | general secretory pathway protein E | VFG0182 | Protein | 3e-160 | 71 |
| Selin_1283 | YP_004112574.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-141 | 62 |
| Selin_1283 | YP_004112574.1 | general secretory pathway protein E | VFG1876 | Protein | 6e-137 | 59 |
| Selin_1283 | YP_004112574.1 | general secretory pathway protein E | VFG2426 | Protein | 4e-77 | 48 |
| Selin_1283 | YP_004112574.1 | general secretory pathway protein E | VFG1880 | Protein | 1e-79 | 43 |
| Selin_1283 | YP_004112574.1 | general secretory pathway protein E | VFG0112 | Protein | 3e-84 | 42 |
