Gene Information

Name : Rpdx1_4996 (Rpdx1_4996)
Accession : YP_004111269.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 5375257 - 5375910 bp
Length : 654 bp
Strand : +
Note : KEGG: bbt:BBta_0686 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGCTGATCGTCTCCGGGCTGACCAAATCCTATGCGTCCGGCCAGGACCGTGTCGCGGTACTGCGCGGCGTCGATCTGGC
GGTGCCGCCCGGCGAGAGCGTGGCGTTGACCGGCGAATCCGGCAGCGGCAAATCGACCTTGCTGCATCTGATCGCCGGCC
TCGATCAGCCCGATGGCGGCGCCATCACGTTCGGCGAGGCGACGATCTCGACCATGCCGGACGCCGAGCGCGCCGCGTTC
CGCCGCGAGCGGCTGGGCCTGGTGTTTCAGCAATTCAACCTGATCCCGAGCCTGACGGTAGCCGACAACCTGTCGTTCCA
GTCGCGGCTCGCCGGCCGCCACGACAAGACCTGGCACGCCGAGCTGATCGAGCGGCTCGGGCTCGGTGCCCTGCTGAAAC
GCTATCCGGAGCAATTGTCCGGCGGCCAGCAGCAACGCGTCGCGATCGGCCGGGCGCTGGCGATCAAGCCGCTGCTGCTG
CTCGCCGACGAGCCGACCGGCAATCTCGACGAGGCCACCGCCGACGACGTGCTGGCGCTCGCCACCGATCTGGTCCGCCG
CACCGGCTGCGGCTTCCTGATGGTGACGCACAGCGAGCGGCTCGCCGGCATGCTGGACCGGCGGGTGCATCTGCACGCAG
GGCTGATCCATTGA

Protein sequence : 
MLIVSGLTKSYASGQDRVAVLRGVDLAVPPGESVALTGESGSGKSTLLHLIAGLDQPDGGAITFGEATISTMPDAERAAF
RRERLGLVFQQFNLIPSLTVADNLSFQSRLAGRHDKTWHAELIERLGLGALLKRYPEQLSGGQQQRVAIGRALAIKPLLL
LADEPTGNLDEATADDVLALATDLVRRTGCGFLMVTHSERLAGMLDRRVHLHAGLIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-32 48
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-33 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-33 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-33 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4996 YP_004111269.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-34 44
Rpdx1_4996 YP_004111269.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4996 YP_004111269.1 ABC transporter-like protein VFG2059 Protein 1e-11 41