Gene Information

Name : Rpdx1_0442 (Rpdx1_0442)
Accession : YP_004106816.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 478372 - 479115 bp
Length : 744 bp
Strand : -
Note : KEGG: bja:blr0460 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGGACAGTCTCATTGAACCCTCGTCATCGGCCGGCGGCGCGCCGGACACCATTGCGATCTCCAACGTCAACCTGTCGCT
GGGCAGCGGCGCCGCGCGGGTGCACATTCTCAAGGACATCAGCCTGAGCGTCGCCGGCGGCGAAGCGATCGGGCTGATCG
GCCCGTCCGGCTCCGGCAAATCCACCCTGCTGATGGTGATGGCCGGGCTGGAGCGGCCCGACAGCGGTGAGGTGGTGGTC
GACGGCACCGCTTTCAATGGTTTGGACGAGGACGCGCTGGCCCGCTTCCGCGGCCGGCAGATCGGAATCGTGTTTCAGTC
CTTCCATCTGATTCCGACGATGACGGCGCTGGAAAACGTGGCGGTGCCGCTGGAGCTGGCCGGCCAGACCGATGCCGCCG
ACCGCGCCGCCCGCGAACTGGCGTCGGTCGGGCTCGGGGAACGGCTTCATCATTATCCGGCGCAGCTCTCCGGCGGCGAG
CAACAGCGGGTGGCACTGGCCCGGGCGCTGGCGCCCGACCCGGCCATCCTGGTCGCGGACGAACCGACCGGCAATCTCGA
CGAGGCCACCGGCAAGCAGATCGTCGACCTGTTGTTCGCCAAGCACGTCGAGCGCGGCATGACGCTGGTGCTGGTGACCC
ATGACGCGGCGCTGGCGCAACGCTGCGACCGGGTGGTGCGGCTGCGTTCCGGGCGGATCGACACGATGCAGCCGGGCGCC
GCCGCTCGCGCGCGATCGGCCTGA

Protein sequence : 
MDSLIEPSSSAGGAPDTIAISNVNLSLGSGAARVHILKDISLSVAGGEAIGLIGPSGSGKSTLLMVMAGLERPDSGEVVV
DGTAFNGLDEDALARFRGRQIGIVFQSFHLIPTMTALENVAVPLELAGQTDAADRAARELASVGLGERLHHYPAQLSGGE
QQRVALARALAPDPAILVADEPTGNLDEATGKQIVDLLFAKHVERGMTLVLVTHDAALAQRCDRVVRLRSGRIDTMQPGA
AARARSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-28 45
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 43
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 3e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_0442 YP_004106816.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-36 46
Rpdx1_0442 YP_004106816.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-39 45
Rpdx1_0442 YP_004106816.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-38 43