Gene Information

Name : Rpdx1_4266 (Rpdx1_4266)
Accession : YP_004110551.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Virulence
Product : periplasmic solute-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 4593034 - 4593951 bp
Length : 918 bp
Strand : -
Note : PFAM: periplasmic solute binding protein; KEGG: hit:NTHI0481 putative periplasmic chelated iron binding protein

DNA sequence : 
ATGAAACTGAAACAGATCGGCAGCGGCTGGGTGCGCAGCGTCGTCGTGGCCGCAGTCGCGGGCGTGCTGCTCGCCGGCCC
GTGCCAGGCGCAGGCGCGCAAGCCGTTCCGCGTGGTGACGACCTTCACGGTGATCCAGGACATCGCCCAGAACGTCGCCG
GCGACAAGGCGATCGTGGAATCGATCACCAAGCCCGGCGCCGAGATCCACGACTATCAGCCGACCCCGCTCGATATCGTG
CGAGCGCAGGCGGCCGATCTCGTGCTGTGGAACGGCTTCAATCTCGAACGCTGGTTCGAGCGGTTCTTCGAGAACGTGAA
GGATGTTCCGAGCGTCGTGGTCACCGAAGGCATCGCGCCGATGGGCATCGCGCAGGGGCCGTACAGCGGCAAGCCCAATC
CGCACGCCTGGATGTCGCCGTCCAACGCGCTGATCTATGTCGAGAACATCCGCAAGGCGCTGGTCAAATACGACCCCGCC
AACGCGGCCGCCTATGATCAGAACGCCGCCGACTACGCGGCCAGGATCAAGGCGCTGGACGAGCCGCTGCGCCGCCGGCT
CGCCGCGATTCCCGAGAATCAGCGCTGGCTGGTGTCGAGCGAAGGCGCGTTCAGCTACCTGACGCGCGATTACCAGATGA
AGGAGGCGTTCCTCTGGCCGATCAATGCCGACGAGCAGGGCACGCCGCAGCAGGTGCGCAAGGTGATCGACCTCGTGCGC
AAGAACAAGATCCCGGTGGTGTTCAGCGAGAGCACGATCTCGGACCGCGCCGCCAAGCAGGTCGCCCGCGAGAGCGGCGC
GCGCTACGGCGGGGTGCTCTATGTCGATTCGCTCAGCGCCGCGGGCGGTCCGGTGCCGACCTATCTGGACCTCCTCGAGG
TGACCGTCGAAACCATCGCCAAGGGGTTCGGGACATGA

Protein sequence : 
MKLKQIGSGWVRSVVVAAVAGVLLAGPCQAQARKPFRVVTTFTVIQDIAQNVAGDKAIVESITKPGAEIHDYQPTPLDIV
RAQAADLVLWNGFNLERWFERFFENVKDVPSVVVTEGIAPMGIAQGPYSGKPNPHAWMSPSNALIYVENIRKALVKYDPA
NAAAYDQNAADYAARIKALDEPLRRRLAAIPENQRWLVSSEGAFSYLTRDYQMKEAFLWPINADEQGTPQQVRKVIDLVR
KNKIPVVFSESTISDRAAKQVARESGARYGGVLYVDSLSAAGGPVPTYLDLLEVTVETIAKGFGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-89 70
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-89 70
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-89 70
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-89 70
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 8e-90 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4266 YP_004110551.1 periplasmic solute-binding protein BAC0439 Protein 2e-96 74
Rpdx1_4266 YP_004110551.1 periplasmic solute-binding protein BAC0349 Protein 5e-90 70

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4266 YP_004110551.1 periplasmic solute-binding protein VFG0525 Protein 5e-90 70