Gene Information

Name : Rpdx1_4265 (Rpdx1_4265)
Accession : YP_004110550.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 4592141 - 4593037 bp
Length : 897 bp
Strand : -
Note : KEGG: spe:Spro_2132 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence :
ATGATCCGGTTCGACCCGGCCGAGGCTCCCGGCGCGGGCGACGCGGTCCCCGGCATCGCGGTGCGCGGTCTGGATGTGAC
CTATCCGAACGGCTACACCGCGGTGCGCGACGCCTCGTTCACGCTTGGCGCCGGGACGATCTGCGCGCTGGTCGGCGTCA
ACGGCAGCGGCAAGTCGACGATCTTCAAGGCGATCATGGGGTTCGTGCGGCCGTCGGCCGGCAGCGTGGAGCTGTGCGGG
ATGCCGGTCGCGCGGGCGCTGAAGCGCAACATCGTCGCCTACGTCCCGCAGAGCGAGGACATCGACTGGAATTTTCCGGT
TCTGGTCGAGACCGTGGTGATGATGGGCCGCTACGGCCACATGAACTTCCTGCGGATTCCGTCGCAGGCCGACCGCCGCG
CGGTCGACCAAGCCCTGGAACGGGTCGGCATGACGGCCTATCGCGACCGCCAGATCGGCGAGCTCAGCGGCGGCCAGAAG
AAGCGTGTGTTTCTCGCCCGCGCGCTGGCGCAGGGCGGCCGGATCGTGCTGCTCGACGAGCCGTTCACCGGCGTCGACGT
CAAGACCGAAACCGCGATCATCGATCTGCTGCGCGAGCTGCGCGACGCCGGCCAACTGATCCTGGTCTCGACCCACGATC
TCGGCAGCGTTCCGCAGTTCTGCGACCAGGTCGTGCTCGTCAACCGCACCGTGCTGGCGGCCGGGCCGACCGCCGAGACC
TTCACCCAGCGCAATCTCGAGCTCGCCTTCGGCGGCGTGCTGCGCAACTTCCAGCTCGGCGGCGCCGACCTGCACAGCGA
CGACGATCAGCGCCGGCTGACGGTGATCACCGACGACGAACGGCCGCTGGTGTTCTACGACGCCCGGCCCAACCAGCGGC
AGGATCAGGAGAGCTGA

Protein sequence :
MIRFDPAEAPGAGDAVPGIAVRGLDVTYPNGYTAVRDASFTLGAGTICALVGVNGSGKSTIFKAIMGFVRPSAGSVELCG
MPVARALKRNIVAYVPQSEDIDWNFPVLVETVVMMGRYGHMNFLRIPSQADRRAVDQALERVGMTAYRDRQIGELSGGQK
KRVFLARALAQGGRIVLLDEPFTGVDVKTETAIIDLLRELRDAGQLILVSTHDLGSVPQFCDQVVLVNRTVLAAGPTAET
FTQRNLELAFGGVLRNFQLGGADLHSDDDQRRLTVITDDERPLVFYDARPNQRQDQES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-80 63
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-80 63
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-80 63
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-80 63
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-79 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4265 YP_004110550.1 ABC transporter-like protein BAC0440 Protein 4e-99 69
Rpdx1_4265 YP_004110550.1 ABC transporter-like protein BAC0350 Protein 4e-80 63
Rpdx1_4265 YP_004110550.1 ABC transporter-like protein BAC0400 Protein 6e-43 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4265 YP_004110550.1 ABC transporter-like protein VFG0526 Protein 4e-80 63