Gene Information

Name : Rpdx1_4264 (Rpdx1_4264)
Accession : YP_004110549.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 4591264 - 4592139 bp
Length : 876 bp
Strand : -
Note : PFAM: ABC-3 protein; KEGG: rhi:NGR_c31040 putative iron transmembrane ABC transporter component

DNA sequence :
ATGGCCGAGGGTTCGCTGCTCGCCGAACTGCTGGTGCCGTTCGCCTACGGCTACATGCTGAAGGCGATGTGGGTGAGCGC
CCTGGTCGGCGGCGTGTGCGCCTTTCTGTCGGCCTATCTGATGCTGAAGGGCTGGTCGCTGATGGGCGACGCCCTCGGGC
ACGCGATCGTTCCGGGCGTCGCCGCCGCCTATATCCTCGGCGCGCCCTTCGCGCTCGGCGCGTTCTTCGCCGGCATCCTG
GCGGCGGCCGGCATGCAGTTCGTCAAGCTGAAGTCGCGGCTGCGCGAGGACGCGGTGATCGGGCTGGTGTTCACCACGTT
GTTCGCGCTCGGTCTGCTGATGGCCTCGATCTGGCCGATGTCGGTGAGCGTGCAGACCATCGTGCTCGGCAACATCCTGG
CGATCTCCGATGCCGACGTCGTCCAGGTGGCGATCATCTCCGCAGTGTCGCTGGCGATTCTGGCGCTGAAGTGGAAGGAT
CTGATGGTGACGTTCTTCGACGAGAGCCACGCCCGCAGCATCGGGCTCGATCCGCGGCGGCTCAAGATCGTGTTCTTCAC
CCTGCTCAGCGCCTGCACGGTCGCCGCGCTGCAGACGGTCGGCGCCTGTCTGGTGATCGCGCTGGTGGTGACGCCCGGCG
CCACCGCCTATCTGCTCACCGATCGGTTCGGCCGGTTGATCCTGATCAGCGTCGCGCTCGGCGCCGTCACCAGCTTTGCC
GGCGCCTATCTCAGTTATTTTCTCGACGGCGCCACCGGCGGCGTGATCGTCACGCTGCAGACCCTGCTGTTTCTGGCCGC
GTTCTACTTCGCGCCGAAGCACGGGGTGATCGCGGCACGCCGGCGGCGGCACGCGACGGCGGGGGTGACGCCGTGA

Protein sequence :
MAEGSLLAELLVPFAYGYMLKAMWVSALVGGVCAFLSAYLMLKGWSLMGDALGHAIVPGVAAAYILGAPFALGAFFAGIL
AAAGMQFVKLKSRLREDAVIGLVFTTLFALGLLMASIWPMSVSVQTIVLGNILAISDADVVQVAIISAVSLAILALKWKD
LMVTFFDESHARSIGLDPRRLKIVFFTLLSACTVAALQTVGACLVIALVVTPGATAYLLTDRFGRLILISVALGAVTSFA
GAYLSYFLDGATGGVIVTLQTLLFLAAFYFAPKHGVIAARRRRHATAGVTP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-74 70
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-74 70
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-74 70
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-74 70
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-74 70
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-39 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-39 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-39 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-39 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-39 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4264 YP_004110549.1 ABC-3 protein BAC0441 Protein 8e-75 70
Rpdx1_4264 YP_004110549.1 ABC-3 protein BAC0351 Protein 1e-74 70
Rpdx1_4264 YP_004110549.1 ABC-3 protein BAC0352 Protein 1e-39 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4264 YP_004110549.1 ABC-3 protein VFG0527 Protein 1e-74 70
Rpdx1_4264 YP_004110549.1 ABC-3 protein VFG0528 Protein 9e-40 42