Gene Information

Name : Rpdx1_4263 (Rpdx1_4263)
Accession : YP_004110548.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 4590395 - 4591267 bp
Length : 873 bp
Strand : -
Note : PFAM: ABC-3 protein; KEGG: spe:Spro_2130 ABC-3 protein

DNA sequence : 
GTGAGCGAGGTCGCCGACTGGATCACCGGACCGCTGGCCTACCCGTTCATGCAGCGGGCGCTGGTCGCGTCTGTGATGGT
GGCAGCGGTCTGCGCGGTGCTGTCCTGCTATCTGGTGCTGAAGGGCTGGTCGCTGATGGGCGACGCCGTCTCTCACGCGG
TGCTGCCCGGCATCGTGGTCGCCCATGTGCTGAACCTGCCGCTGGCGGCCGGGGCGTTCGTGGCCGGCCTGTCGTGCGCG
GTGGTCACCGGCTATCTGAAGGAGAACAGCCGGGTGAAGGAGGACACGGTGATGGGCATCGTGTTCTCCGGGATGTTCGG
CTTCGGCCTGGTGCTGTTCACCAGGATCGAGACCGACCAGCATCTCAACCACATCCTGTTCGGCAATGTGCTCGGCGTCA
CGCCGCGCGACCTGATCGAGATCGCGATCGTCGCCGGTGGGACGCTGCTGGCGGTGCTGCTCAAACGCCGCGACCTCTTG
CTGTACTGCTTCGACCCCCACCACGCCCGCTCGATCGGCCTGCCGGTGAGGGCGCTGCACTACGGACTGCTGGTGCTGCT
CGCGTTGACGATCGTCGCGTCGCTGAAGGCGGTCGGCATCATCCTGGTGGTCGCGATGCTGATCGCACCCGGCGCCACCG
CCTATCTGCTCACCGACAGCTTCGAGCGGATGCTGCTGGTCGCCGCTGCGGTCGCCACCGGCTCGGCCGCGGTCGGCACG
CTCGTCAGCTTCCACATCGACGGCGCCACGGGCGCCTGCATCGTGCTGACGCAGGCGCTGGTGTTCTGCGCGGCGTTCCT
GTTCGCACCGAAGCGCGGATTGCTGCGTGCCAACCGGGCCGAGGGAGCAAGCCGGTCTGGGCCGGCGGGGTGA

Protein sequence : 
MSEVADWITGPLAYPFMQRALVASVMVAAVCAVLSCYLVLKGWSLMGDAVSHAVLPGIVVAHVLNLPLAAGAFVAGLSCA
VVTGYLKENSRVKEDTVMGIVFSGMFGFGLVLFTRIETDQHLNHILFGNVLGVTPRDLIEIAIVAGGTLLAVLLKRRDLL
LYCFDPHHARSIGLPVRALHYGLLVLLALTIVASLKAVGIILVVAMLIAPGATAYLLTDSFERMLLVAAAVATGSAAVGT
LVSFHIDGATGACIVLTQALVFCAAFLFAPKRGLLRANRAEGASRSGPAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-45 55
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-45 55
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-45 55
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-46 55
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-46 55
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-36 44
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-36 44
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-36 44
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-36 44
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-36 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4263 YP_004110548.1 ABC-3 protein BAC0442 Protein 4e-61 64
Rpdx1_4263 YP_004110548.1 ABC-3 protein BAC0352 Protein 3e-46 55
Rpdx1_4263 YP_004110548.1 ABC-3 protein BAC0441 Protein 9e-35 45
Rpdx1_4263 YP_004110548.1 ABC-3 protein BAC0351 Protein 1e-36 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_4263 YP_004110548.1 ABC-3 protein VFG0528 Protein 3e-46 55
Rpdx1_4263 YP_004110548.1 ABC-3 protein VFG0527 Protein 1e-36 44