Gene Information

Name : Rpdx1_3854 (Rpdx1_3854)
Accession : YP_004110148.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4139668 - 4140621 bp
Length : 954 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00004 putative insertion sequence transposase protein

DNA sequence :
ATGAACATTCACAAGAATGCCCGTTTGACGCCGATTGGTCGAGAGCGGTTGGTGCAGGCGGTGTTGAGCGGGCAGACGCC
GAAGGCCGCCGCACAAGCCGCAGGCGTCTGCCCGCGGACGGCCCGCAAATGGGTTGCCCGGTTCAAGGCCGAAGGGCGCG
CAGGGCTTGCCGATCGCTCGTCGCGGCCGCGGCGGCTGTACAAGCCGACGCCAGTGGCGACCGTGGAGCAGGTCGAACGG
CTGCGCCGTCAGCGTCTGACCGGCAAGCAGATCGCCGCCGATCTCGGCCTGTCGCCGGCCACCGTCAGCCGTATCCTGCG
ACGCCTGGGGCTCAACCGAATGCGTGACCTGGAGCCGGCCGAACCAGCCCGCCGCTACGAGTACGCCCATCCCGGCGACA
TGATCCACATCGACATCAAGAAGCTCGGCCGCTTCGACAAGATCGGCCATCGCATCACCGGCGATCGCGCCGGTCAAAGC
AACAGCCGCGGCGTCGGCTGGGAGTTCGTCCACGTCTGCATCGACGACGCCTCACGTGTCGCATTCTCGCAGATTTTCGC
GGACGAGAAGGCCGTCAGCGCGATCGCCTTCCTCAAGGCCGCGATCGCCTATTACGCCAGCCTCGGCGTCACCGTTAGAC
GCGTCATGACCGACAACGGAAGCTGCTACATATCGACTGATTTCCGAAACGCCTGCCACGCTCTCGGGCTCAAGCATATC
CGCACCAGGCCATACACACCTAAAACCAACGGCAAGGCCGAGCGCTTCATCCAAAGTGCTCTCAGGGAATGGGCTTACGC
GCAGGCCTATCCGACCTCGACACGCAGGGCCGAGGAACTGCCGATCTGGCTGCATCGATACAATTGGCACCGCCCTCACG
GCGGCATAAAATCACAGCCGCCAATCAGCAGACTCGGACTCTCCGAGGACAACCTGTTGAGGCTCCACAGCTAG

Protein sequence :
MNIHKNARLTPIGRERLVQAVLSGQTPKAAAQAAGVCPRTARKWVARFKAEGRAGLADRSSRPRRLYKPTPVATVEQVER
LRRQRLTGKQIAADLGLSPATVSRILRRLGLNRMRDLEPAEPARRYEYAHPGDMIHIDIKKLGRFDKIGHRITGDRAGQS
NSRGVGWEFVHVCIDDASRVAFSQIFADEKAVSAIAFLKAAIAYYASLGVTVRRVMTDNGSCYISTDFRNACHALGLKHI
RTRPYTPKTNGKAERFIQSALREWAYAQAYPTSTRRAEELPIWLHRYNWHRPHGGIKSQPPISRLGLSEDNLLRLHS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDBH8_0912 YP_005160004.1 transposase-like protein Not tested Not named Protein 2e-45 46
tnp7109-27 YP_001800924.1 transposase for insertion sequence Not tested Not named Protein 2e-39 45