Gene Information

Name : Rpdx1_3579 (Rpdx1_3579)
Accession : YP_004109881.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3838041 - 3838757 bp
Length : 717 bp
Strand : -
Note : KEGG: bbt:BBta_5377 putative ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence :
GTGGGCCAAGACGCGAGTCCCGTGTTCTCCGCCAGAGGCCTGTGCAAGACCTACGGGTCTGGCGAGGCGATCGTCTATGC
GCTGCGCGACCTCGACCTCGACATCTGGAACGGCGAATTCGTCGTGCTGCTGGGTCCGTCTGGATCCGGCAAATCGACCC
TGCTCAACATTCTTGGCGGGCTCGACGCGCCGACCTCCGGGCACGCCAGCTGGCGCGACCACGAGTTGACCGGCGCGAGC
GAAGCGGAATTGACGCGCTACCGGCGCGAGCACGTCGGGTTCGTGTTCCAGTTCTACAATCTCATCCCGAGCCTCACGGT
CGAAGAGAACGTCGGACTGGTGGCAAGCATCGCCGAAAATCCGATGAAGCCGGTCGAGGCGCTGGCGCTGGTCGGTCTCT
CGCATCGGCTCCGGCACTTCCCATCGCAGCTCTCGGGCGGCGAGCAGCAGCGCGTCGCAGTCGCCCGCGCCATCGTCAAA
CGGCCGGATGCGCTGCTGTGCGACGAGCCGACTGGCGCGCTCGATGTCGAGACCGGCAAGCTGGTACTGGCTGCGCTCGC
TCGGGCCAATGCCGACCTCGGGGCCACCACCATTGTCATCACCCACAATTCGGCGATCGCCGGCATGGCCAACCGGGTGC
TGCGGCTCGGCCATGGCCGGATCGTCGCCGACGAGCGCAACACCACGCTGTTGCGGCCCGAGGAGCTGAGCTGGTGA

Protein sequence :
MGQDASPVFSARGLCKTYGSGEAIVYALRDLDLDIWNGEFVVLLGPSGSGKSTLLNILGGLDAPTSGHASWRDHELTGAS
EAELTRYRREHVGFVFQFYNLIPSLTVEENVGLVASIAENPMKPVEALALVGLSHRLRHFPSQLSGGEQQRVAVARAIVK
RPDALLCDEPTGALDVETGKLVLAALARANADLGATTIVITHNSAIAGMANRVLRLGHGRIVADERNTTLLRPEELSW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-30 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-30 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_3579 YP_004109881.1 ABC transporter-like protein NC_012469.1.7685735. Protein 4e-45 50
Rpdx1_3579 YP_004109881.1 ABC transporter-like protein CP001581.1.gene798.p Protein 2e-37 44
Rpdx1_3579 YP_004109881.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-29 44
Rpdx1_3579 YP_004109881.1 ABC transporter-like protein NC_012469.1.7686946. Protein 2e-19 42