Gene Information

Name : Rpdx1_3457 (Rpdx1_3457)
Accession : YP_004109760.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Unknown
Product : Pseudomurein-binding repeat
Function : -
COG functional category : K : Transcription
COG ID : COG1061
EC number : -
Position : 3694439 - 3696508 bp
Length : 2070 bp
Strand : -
Note : PFAM: Pseudomurein-binding repeat; KEGG: pap:PSPA7_5332 Sea12

DNA sequence :
GTGACGAAAGAAGTGAAATCCGTTCCGTCTGTTTCGGTGTCCTATGCTCAGAACGGCGGTTCAACCAAGGCCAACGCCCT
CGGGATGCGCCCCATGCAGGAGCGTGCCTATGAGAAGCGCGGCGAACAATATCTGCTAATCAAATCGCCGCCGGCGTCTG
GCAAGAGCCGTGCGCTCATGTTCATCGCACTCGACAAACTTGCCAACCAAGGTCTGAAACAGGCGATCATTGTTGTCCCT
GAACGGAGTATCGGCGCGAGCTTCCACGACGAGCGATTGAGCCAGTTCGGTTTTTGGGCCGATTGGCATGTCGAGCCGAA
ATGGAATTTGTGCAATGCGCCCGGAGCGGATAACGGCGGCAAGGTCAATTCGGTCGAGGCGTTCCTGCAAAGTGATGACA
AGGTGCTGGTTTGCACCCATGCCACGTTTCGCTTCGCCGTGGACAAGTTCGGCGTCGAGGCGTTCGACGGCCGACTAATC
GCGGTCGACGAGTTTCACCACGTTTCTGCCAACCCTGACAACAAGCTCGGTCTGCACCTTGGAGCGTTCATCGCCCGGGA
CAAAGTGCACATGGTAGCGATGACCGGTTCATATTTCCGGGGCGACGCCGAGGCTGTGCTGGCCCCGGAGGACGAGGCCA
AGTTCGATACCGTCACCTACACCTACTATGAGCAGTTGAACGGCTATCAGTATCTCAAACGGCTCGACATCGGATACTTT
TTCTATTCCGGTTCCTACGCTGATGACATTCTCGCGGTGTTGAATCCCGCCGAGAAGACCATCATTCACATCCCCAGCGT
CAATTCGCGCGAAAGTACGAAGGACAAGATCAGGGAGGTGGAGCATATCATCGAGGCGCTTGGCGACTGGCAAGGCGCCG
ACGAGGCCACGGGCTTCCAATTGGTCAAAACGCCCGAAGACCGGGTGCTGCGGATCGCCGACCTTGTCGACGACGATGGA
GCCAAACGGGACCGGGTCTCCGCTGCGCTGAAAGACCCAGCGCAGAAGAACAACCGCGATCACGTCGACATCATCATCGC
ACTGGGCATGGCGAAGGAAGGTTTCGACTGGATTTGGTGCGAACACGCGCTGACCGTCGGCTATCGGTCGAGCCTGACGG
AGATCGTGCAAATCATCGGCCGCGCCACCCGCGATGCGCCGGGCAAGACCCGCGCCCGGTTCACCAACCTGATCGCCGAA
CCGGACGCCTCCGAAGAAGCCGTGACCGAGGCGGTCAACGACACGTTGAAGGCCATCGCCGCCAGCCTGCTGATGGAGCA
GGTTTTGGCGCCCCGCTTTGAGTTCAAGCCCAAAAACCCGGCCAGCGGGCCTGTCGAAGGCTTCGACTACGGTGAGGGAG
GGTATCAGCTCGACAAGTGCAACGTCGGCTTCAACGAGGAGTCCGGCACATTCCAGATCGAGATCAAGGGGCTGGCCGAA
CCCAAGAGCGAAGAAGCGTCACGCATCTGCCAGCAGGACTTGAACGAGGTGATCGCTGCCTTCGTACAGGACAAGACGGC
CATCGAGCGCGGCCTGTTTGATCAGGAGCTTGTCCCCGAAGAATTGACCCAGCTTCGGATGGGCAAGATCATCAAGGATA
AATACCCAGAGCTTGATGAGGAGGATCAAGAGGCAGTGCGGCAGCACGCCGTCGCCGCGCTGAACCTCACCCAGAAGGCA
AAGGAGGTTGCCCTTGGCGGGGGTGGGGTCGAAGGCGACGGCGAGAAAAGTCCGAACACCGCGTTCATCGAGGGGGTCCG
TCGGTTTGCCATGGACGTGCGCGAACTCGACATCGACTTGATCGACCGCATCAACCCTTTCGGCGAGGCCTATGCCATCC
TGTCGAAGGCGATGACCGAGGAGAGCTTGAAGCAGGTCGCCGCCGTGATCGGCGCCAAACGTGTCACCCTGACCGTGGAA
GAGGCGCGCGAACTGGCCAAGCGGGCGCTACGGTTCAAGCAGGAGCGCGGCCGTCTGCCATCCATTACGTCGCCCGACGC
CTGGGAGAAGCGCATGGCCGAAGGTGTGGCTTTCCTCGCCCGGATGAAGGCGGAGGCCGAGCGTGTCTAA

Protein sequence :
MTKEVKSVPSVSVSYAQNGGSTKANALGMRPMQERAYEKRGEQYLLIKSPPASGKSRALMFIALDKLANQGLKQAIIVVP
ERSIGASFHDERLSQFGFWADWHVEPKWNLCNAPGADNGGKVNSVEAFLQSDDKVLVCTHATFRFAVDKFGVEAFDGRLI
AVDEFHHVSANPDNKLGLHLGAFIARDKVHMVAMTGSYFRGDAEAVLAPEDEAKFDTVTYTYYEQLNGYQYLKRLDIGYF
FYSGSYADDILAVLNPAEKTIIHIPSVNSRESTKDKIREVEHIIEALGDWQGADEATGFQLVKTPEDRVLRIADLVDDDG
AKRDRVSAALKDPAQKNNRDHVDIIIALGMAKEGFDWIWCEHALTVGYRSSLTEIVQIIGRATRDAPGKTRARFTNLIAE
PDASEEAVTEAVNDTLKAIAASLLMEQVLAPRFEFKPKNPASGPVEGFDYGEGGYQLDKCNVGFNEESGTFQIEIKGLAE
PKSEEASRICQQDLNEVIAAFVQDKTAIERGLFDQELVPEELTQLRMGKIIKDKYPELDEEDQEAVRQHAVAALNLTQKA
KEVALGGGGVEGDGEKSPNTAFIEGVRRFAMDVRELDIDLIDRINPFGEAYAILSKAMTEESLKQVAAVIGAKRVTLTVE
EARELAKRALRFKQERGRLPSITSPDAWEKRMAEGVAFLARMKAEAERV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB0715_00996 YP_008216144.1 hypothetical protein Not tested AbaR27 Protein 4e-87 45
CDPW8_0255 YP_005141822.1 putative ATP-dependent helicase Not tested Not named Protein 5e-98 45