Gene Information

Name : Rpdx1_2458 (Rpdx1_2458)
Accession : YP_004108782.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Resistance
Product : hexapeptide repeat-containing transferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 2646544 - 2647188 bp
Length : 645 bp
Strand : +
Note : KEGG: pde:Pden_0116 hexapaptide repeat-containing transferase

DNA sequence : 
ATGATGCTTAACGTTTTCGAAAGCCCCTTCAAGGGCATCACGCTCGATCGCCTGGTCACCAACCCCAATATCCGGGTCGG
CCGCTACAGCTACTATTCGGGCTATTATCACGGTCACGGCTTCGACGACTGCGCCCGCTTCCTTCTGCCGGACGACGGTG
TCGACAAGCTCGTGATCGGTTCGTTCTGCTCGATCGGCTCGGGCGCGGCCTTCATCATGGCCGGAAACCAGGGGCATCGC
AGCGACTGGATGAGCACGTTCCCGTTCTTCTGGATGCCCGAAATGCCCGCCTTCGCCAGCGCGGCAAACGGATTCCAACC
CGCCGGCGACACGGTGATCGGCAACGATGTCTGGATCGGCACCGAAGCCATCGTCATGCCCGGCGTCAGAATTGGCGACG
GCGCAGTGATCGGCGCGCGGGCTGTGGTAACGAACGACGTCGAGCCTTATGCCATCATCGGCGGCAACCCCGCGAAGATG
ATCCGGAAGCGGTTTGGCGATCCCGACATCGCGCGACTGCTGGAGCTTCGCTGGTGGGACTGGAGCGACGACGACCTGAG
AGCCGCGATGCCCATCCTGACCAGCGGCGACATTGCGGCGCTTCACCGTCACTGGCAGACGGCGGTCCAATCACCGCGCA
GCTAG

Protein sequence : 
MMLNVFESPFKGITLDRLVTNPNIRVGRYSYYSGYYHGHGFDDCARFLLPDDGVDKLVIGSFCSIGSGAAFIMAGNQGHR
SDWMSTFPFFWMPEMPAFASAANGFQPAGDTVIGNDVWIGTEAIVMPGVRIGDGAVIGARAVVTNDVEPYAIIGGNPAKM
IRKRFGDPDIARLLELRWWDWSDDDLRAAMPILTSGDIAALHRHWQTAVQSPRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 2e-54 70
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 4e-54 70
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 4e-54 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase NC_002516.2.878374.p Protein 6e-55 74
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase AY123251.gene2.p01 Protein 9e-55 70
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase AY740681.1.gene5.p01 Protein 2e-54 70
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase AF322577.2.gene4.p01 Protein 2e-54 70
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase JF268688.1.gene6.p01 Protein 7e-49 67
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase CP001581.1.gene990.p Protein 2e-28 43
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase NC_011595.7057349.p0 Protein 2e-24 42
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase NC_010410.6000796.p0 Protein 2e-24 42
Rpdx1_2458 YP_004108782.1 hexapeptide repeat-containing transferase NC_011586.7045146.p0 Protein 1e-24 42