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Name : Rpdx1_2330 (Rpdx1_2330) Accession : YP_004108654.1 Strain : Rhodopseudomonas palustris DX-1 Genome accession: NC_014834 Putative virulence/resistance : Resistance Product : major facilitator superfamily protein Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 2500995 - 2502260 bp Length : 1266 bp Strand : + Note : PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr4054 tetracycline resistance protein DNA sequence : ATGACCGAGGAAGCCACAGCGCAGCAAACGCCGGTCGCCGGAACGACCGGGCCGCGCCGCGCCGCTGTCGGCTTCATCTT CATCACCATCGCGCTCGACATGTTGAGCCTGGGCATGATCCTGCCGATCCTGCCCAAGCTGATCGAGAGCTTCTCCGACG ACAACACCGCGAATGCGGCGCGGATCTACGGGCTGTTCGGCACCGCCTGGGCGCTGATGCAGTTGTTCGCGTCGCCGATC CTCGGCGGGCTGTCGGACCGGTTCGGACGGCGGCCGGTGATTTTGCTGTCCAATCTCGGCCTTGGTCTCGACTACGTCCT GATGGCGCTGGCGCCGTCGCTGTGGTGGCTGTTCGTCGGCCGGGTGCTGTCGGGGATCACTTCGGCGAGCATCTCGACGT CGTTCGCCTACATTGCCGACGTCACGCCCGCGGAGAAGCGCGCCGCGGTGTTCGGCATGGTCGGCGCTGCGTTCGGGCTC GGCTTCACCTTCGGTCCGGCGATCGGCGGCCTGCTCGGCGGTGTCGACCCGCGGCTGCCGTTCTGGGTGGCGGCGGCGCT GAGTTTCGCCAACACGCTGTACGGCCTGTTTGTGCTGCCGGAGTCGCTGCCGCGTGAACGGCGGTCGCCGTTCCGCTGGA AATCCGCCAACCCGATCGGAGCGGTGCGGCTGCTCACCTCCAACGCCACGCTCGCTGCGCTGGCGGTGGTCGAGTTCTGT GCCGAGGTCGCCCATGTCGCGCTGCCGGCGATCTTCGTGCTGTACACCGGCTATCGCTACGGTTGGGATCAGACCACGGT CGGTCTGGCGCTGGCGTTCGTCGGCGTCTGCACCACGATCGTGCAGGGCTTTCTGGTCGGTCCCGCGGTGAAGCGGCTCG GCGAACGTCGGGCTCAGATTTTCGGCTATGGCGGCGGCGCGCTCGGCTTTCTGATCTATGCGCTGGCGCCGAGCGGCACG CTGTTCTGGATCGGCATTCCGGTGATGACGCTGTGGGGCATTGCCGGGCCAGCGACCTCCGGGATGATGACCCGGCTGGT GTCGCCGGAGCAGCAGGGGCAGTTGCAAGGCGCCACCACCAGCGTGAAGAGCGTTGCCGAGCTGATCGGCCCATTCTTCT TCACGATGATCTTCGCTTATTTCATCGACGGCGGTACGCCGCTGCATCTGCCCGGTGCGCCGTTTCTGGTCGCCGGCGCC TTGCTGATGGTGTCGGTGGCGATCGTGGTGGTTGCAGGCGGCCGCACCAAGCGAGCTTTGCCCTGA Protein sequence : MTEEATAQQTPVAGTTGPRRAAVGFIFITIALDMLSLGMILPILPKLIESFSDDNTANAARIYGLFGTAWALMQLFASPI LGGLSDRFGRRPVILLSNLGLGLDYVLMALAPSLWWLFVGRVLSGITSASISTSFAYIADVTPAEKRAAVFGMVGAAFGL GFTFGPAIGGLLGGVDPRLPFWVAAALSFANTLYGLFVLPESLPRERRSPFRWKSANPIGAVRLLTSNATLAALAVVEFC AEVAHVALPAIFVLYTGYRYGWDQTTVGLALAFVGVCTTIVQGFLVGPAVKRLGERRAQIFGYGGGALGFLIYALAPSGT LFWIGIPVMTLWGIAGPATSGMMTRLVSPEQQGQLQGATTSVKSVAELIGPFFFTMIFAYFIDGGTPLHLPGAPFLVAGA LLMVSVAIVVVAGGRTKRALP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 1e-42 | 43 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-42 | 43 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-42 | 43 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 1e-42 | 43 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 9e-43 | 43 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 6e-43 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rpdx1_2330 | YP_004108654.1 | major facilitator superfamily protein | NC_010410.6002597.p0 | Protein | 4e-43 | 43 |
| Rpdx1_2330 | YP_004108654.1 | major facilitator superfamily protein | CP001485.1.gene2821. | Protein | 4e-43 | 43 |
| Rpdx1_2330 | YP_004108654.1 | major facilitator superfamily protein | AF534183.gene.p01 | Protein | 4e-43 | 43 |
| Rpdx1_2330 | YP_004108654.1 | major facilitator superfamily protein | NC_011586.7045189.p0 | Protein | 1e-39 | 42 |
| Rpdx1_2330 | YP_004108654.1 | major facilitator superfamily protein | AF090987.gene.p01 | Protein | 1e-34 | 42 |
| Rpdx1_2330 | YP_004108654.1 | major facilitator superfamily protein | X75761.gene.p01 | Protein | 3e-42 | 42 |
