Gene Information

Name : Rpdx1_2095 (Rpdx1_2095)
Accession : YP_004108432.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2240965 - 2241894 bp
Length : 930 bp
Strand : +
Note : PFAM: Integrase catalytic region; KEGG: oan:Oant_4683 integrase catalytic region

DNA sequence :
ATGGTAGCGCCCGCTGCCAAGCGGGATGCTGTCGCCCATCTCCAGACTGTCTATGGGATGAGCGAGCGGCGGGCGTGCCA
GGTGCTGGGGTGCTGTCGGATGACAATGCGTTACCACGCCACCAGGATCGATGATGGTTTGCTGCGCGAGCGGATGAAGG
CCATTGCCCATGAGCGGCGACGGTTCGGCTATCGACGGCTGCACGTTCTGCTCCGACGCGAGGGACATGTGGTCAATCAC
AAGCGATTGTTCCGGATCTATCGCGAGGAGAAGCTGACTGTGCGTCGCCGAGGCGGCCGCAAGCGGGCCATGGGCACGCG
GGCACCGATGCTGATCCCGATGGCGCCGAACCAGCGCTGGTCGCTTGACTTCGTCTCCGACCAGATGACCGACTGCCGGC
GCTTCAGGGTGCTGACGGTGGTAGACGATTGCACGCGGGAATGCCTTGCCCTGGTTGCCGACACTTCGCTGTCTGGACTG
CGGGTGGCGCGCGAACTCGAGGCGCTCATCGCCAGGCGCGGGAAGCCGGCAATGATCGTCAGCGACAACGGCACCGAGTT
TACCTCGAACGCCATCCTGAGCTTCGCCGACCGCATGCGGATCGATTGGCATTACATCGCCCCGGGCAAGCCGATCCAGA
ACGCCTTCATCGAAAGCTTCAACGGCCGGCTACGCGACGAACTGCTCAACGAAACGCTGTTCCCCTCGCTCTCGCACGTG
CGGGCGACGGTGGCGTCGTGGCGAGCCGACTACAATCTCAACCGACCCCACTCGCGGCTCGGCTGGCTAACACCTGCCGA
ATACGCCGACACCTTCAACCCGCGACGGGATCTGGCGCTGCGCTCAATGGCCAGCTCCACGCCAGCCCCCGTCGCTCACC
CCGCCCAGATGGGTAAAACCAACCGTCAGAGTCTACGTCACCCTGGATAG

Protein sequence :
MVAPAAKRDAVAHLQTVYGMSERRACQVLGCCRMTMRYHATRIDDGLLRERMKAIAHERRRFGYRRLHVLLRREGHVVNH
KRLFRIYREEKLTVRRRGGRKRAMGTRAPMLIPMAPNQRWSLDFVSDQMTDCRRFRVLTVVDDCTRECLALVADTSLSGL
RVARELEALIARRGKPAMIVSDNGTEFTSNAILSFADRMRIDWHYIAPGKPIQNAFIESFNGRLRDELLNETLFPSLSHV
RATVASWRADYNLNRPHSRLGWLTPAEYADTFNPRRDLALRSMASSTPAPVAHPAQMGKTNRQSLRHPG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13540.1 insertion sequence IS407 OrfB Not tested PAGI-8 Protein 3e-54 47
EXB25 ABD94712.1 hypothetical protein Not tested ExoU island B Protein 5e-24 44
XCV0439 YP_362170.1 ISRSO12 transposase (fragment) Not tested Hrp PAI Protein 7e-37 44
trp1400B CAB46580.1 IS1400 transposase B Not tested HPI Protein 4e-43 42