Gene Information

Name : Rpdx1_1879 (Rpdx1_1879)
Accession : YP_004108224.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Unknown
Product : Integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2009600 - 2010553 bp
Length : 954 bp
Strand : -
Note : PFAM: Integrase catalytic region; KEGG: ret:RHE_PD00004 putative insertion sequence transposase protein

DNA sequence :
ATGAACATTCACAAGAATGCCCGTTTGACGCCGATTGGTCGAGAGCGGCTGGTGCAGGCGGTGTTGAGCGGGCAGACGCC
GAAGGCCGCCGCACAAGCCGCAGGCGTCTGCCCGCGGACGGCCCGCAAATGGGTTGCCCGGTTCAAGGCCGAAGGGCGCG
CAGGGCTTGCCGATCGCTCGTCGCGGCCGCGGCGGCTGTACAAGCCGACGCCAGTGGCGACCGTGGAGCAGGTCGAACGG
CTGCGCCGTCAGCGTCTGACCGGCAAGCAGATCGCCGCCGATCTCGGCCTGTCGCCGGCCACCGTCAGCCGTATCCTGCG
ACGCCTGGGGCTCAACCGAATGCGTGACCTGGAGCCGGCCGAACCAGCCCGCCGCTACGAGTACGCCCATCCCGGCGACA
TGATCCACATCGACATCAAGAAGCTCGGCCGCTTCGACAAGATCGGCCATCGCATCACCGGCGATCGCACCGGCCAAAGC
AACAGCCGCGGCGTCGGCTGGGAGTTCGTCCACGTCTGCATCGACGACGCCTCACGTGTCGCATTCTCGCAGATTTTCGC
GGACGAGAAGGCCGTCAGCGCGATCGCCTTCCTCAAGGCCGCGATCGCCTATTACGCCAGCCTCGGCGTCACCGTTAGAC
GCGTCATGACCGACAACGGAAGCTGCTACATATCGACTGATTTCCGAAACGCCTGCCACGCTCTCGGGCTCAAGCATATC
CGCACCAGGCCATACACACCTAAAACCAACGGCAAGGCCGAGCGCTTCATCCAAAGTGCTCTCAGGGAATGGGCTTACGC
GCAGGCCTATCCGACCTCGACACGCAGGGCCGAGGAACTGCCGATCTGGCTGCATCGATACAATTGGCACCGCCCTCACG
GCGGCATAAAATCACAGCCGCCAATCAGCAGACTCGGACTCTCCGAGGACAACCTGTTGAGGCTCCACACCTAG

Protein sequence :
MNIHKNARLTPIGRERLVQAVLSGQTPKAAAQAAGVCPRTARKWVARFKAEGRAGLADRSSRPRRLYKPTPVATVEQVER
LRRQRLTGKQIAADLGLSPATVSRILRRLGLNRMRDLEPAEPARRYEYAHPGDMIHIDIKKLGRFDKIGHRITGDRTGQS
NSRGVGWEFVHVCIDDASRVAFSQIFADEKAVSAIAFLKAAIAYYASLGVTVRRVMTDNGSCYISTDFRNACHALGLKHI
RTRPYTPKTNGKAERFIQSALREWAYAQAYPTSTRRAEELPIWLHRYNWHRPHGGIKSQPPISRLGLSEDNLLRLHT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CDBH8_0912 YP_005160004.1 transposase-like protein Not tested Not named Protein 3e-45 46
tnp7109-27 YP_001800924.1 transposase for insertion sequence Not tested Not named Protein 2e-39 45