Gene Information

Name : Rpdx1_1463 (Rpdx1_1463)
Accession : YP_004107818.1
Strain : Rhodopseudomonas palustris DX-1
Genome accession: NC_014834
Putative virulence/resistance : Virulence
Product : export protein FliQ family 3
Function : -
COG functional category : N : Cell motility
COG ID : COG1987
EC number : -
Position : 1561747 - 1562010 bp
Length : 264 bp
Strand : +
Note : PFAM: export protein FliQ family 3; KEGG: nwi:Nwi_1135 flagellar biosynthesis protein FliQ

DNA sequence : 
ATGACCGGTCCCGAAACTCTCGACGTCGCCCGCGACGCGATCTGGACCATCGTGGTGGTGTCGGCGCCGCTGATGGTGGT
CGGCCTGGTGGTCGGCGTCGCAGTGTCGCTGGTGCAGGCGCTGACCCAGATTCAGGAGCAGACGCTGGTGTTCGTGCCGA
AAATCCTGGCGATGTTCATCACGCTGGTGCTCGCATTGCCGTTCATGGCCGACGCGCTGCACGCCCAGATGCTCCGGATA
TCGTCGCGAATCATCGGCGGTTGA

Protein sequence : 
MTGPETLDVARDAIWTIVVVSAPLMVVGLVVGVAVSLVQALTQIQEQTLVFVPKILAMFITLVLALPFMADALHAQMLRI
SSRIIGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 7.3 46
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 7.3 46
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 7.3 46
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 2.0 45
ssaS NP_456108.1 putative type III secretion protein Virulence SPI-2 Protein 0.037 43
ssaS CAA68200.1 secretion system apparatus, SsaS Virulence SPI-2 Protein 0.021 43
ssaS NP_805091.1 type III secretion protein Virulence SPI-2 Protein 0.037 43
ssaS YP_216428.1 secretion system apparatus protein SsaS Virulence SPI-2 Protein 0.031 43
ssaS NP_460385.1 type III secretion system apparatus protein Virulence SPI-2 Protein 0.031 43
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 6.7 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rpdx1_1463 YP_004107818.1 export protein FliQ family 3 VFG0395 Protein 7e-04 44
Rpdx1_1463 YP_004107818.1 export protein FliQ family 3 VFG0520 Protein 0.009 43
Rpdx1_1463 YP_004107818.1 export protein FliQ family 3 VFG1260 Protein 0.011 42