Gene Information

Name : Rumal_0887 (Rumal_0887)
Accession : YP_004104048.1
Strain : Ruminococcus albus 7
Genome accession: NC_014833
Putative virulence/resistance : Resistance
Product : sigma 54 interacting domain-containing protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1010897 - 1011604 bp
Length : 708 bp
Strand : +
Note : KEGG: mru:mru_2207 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAAAGAAACAGCGGTAGAATTCAAGGATGTTGTAAAGATCTATGGTAAAGGGGAGGGTGCTCAGACTGCTGTAGACAA
TGTAAGCTTTAAGATAGACAAAGGTGAGTTTGTGGTCATACTGGGTCAGTCGGGTGCAGGAAAGTCCACTGTGCTGAATA
TGCTTGGCGGCATGGATGTACCCACATCAGGCAAGGTGATAGTTGACGGTCAGGAGATATCGTCATTCAATGATAAAAAG
CTTTCGCAGTACCGTGCGGAAGTTATCGGTTTTATTTTCCAGTTCTATAATCTTATCCCGGGGCTGACGGCTTATGAGAA
TGTTGCGCTGGTCAAGGATATTAAAAAGTCTGCACTTGATGCAAATGAAATGCTTGACCGTGTGGGGCTATCAGACCAGA
AGCATAAGTTCCCGGCGCAGATGTCAGGCGGCCAGCAGCAGAGAGTTTCTATCGCACGCGCACTTGCAAAAGATCCCAAG
ATCATTCTTGGCGATGAGCCTACAGGTGCTCTTGATTCCGAAACGGGCAGGATAGTCATCGAACTGCTGCAAAAGCTTTC
CACTGAGGACGGAAACACAGTCATTCTCGTTACCCATAACGCGGATATAGCGAAGTGTGCAAATAAAGTCATCCATATGA
AGAATGCGAAGATAAAGTCTGTAAAGATAAATGAACATCCACTCTCGGCAGATGAGATAGAGTGGTAA

Protein sequence : 
MKETAVEFKDVVKIYGKGEGAQTAVDNVSFKIDKGEFVVILGQSGAGKSTVLNMLGGMDVPTSGKVIVDGQEISSFNDKK
LSQYRAEVIGFIFQFYNLIPGLTAYENVALVKDIKKSALDANEMLDRVGLSDQKHKFPAQMSGGQQQRVSIARALAKDPK
IILGDEPTGALDSETGRIVIELLQKLSTEDGNTVILVTHNADIAKCANKVIHMKNAKIKSVKINEHPLSADEIEW

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-34 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-34 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-34 42
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-35 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rumal_0887 YP_004104048.1 sigma 54 interacting domain-containing protein NC_012469.1.7685735. Protein 1e-54 52
Rumal_0887 YP_004104048.1 sigma 54 interacting domain-containing protein CP001581.1.gene598.p Protein 3e-40 46
Rumal_0887 YP_004104048.1 sigma 54 interacting domain-containing protein CP001581.1.gene798.p Protein 2e-42 44
Rumal_0887 YP_004104048.1 sigma 54 interacting domain-containing protein NC_012469.1.7686878. Protein 2e-41 43