|
Name : Tmar_0341 (Tmar_0341) Accession : YP_004101193.1 Strain : Thermaerobacter marianensis DSM 12885 Genome accession: NC_014831 Putative virulence/resistance : Unknown Product : integrase Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 400807 - 402042 bp Length : 1236 bp Strand : + Note : COGs: COG4584 transposase and inactivated derivatives; InterPro IPR017894: IPR001584: IPR013249; KEGG: chy:CHY_1117 ISChy4, transposase; PFAM: Integrase catalytic region; Sigma-70 region 4 type 2; SPTR: Integrase catalytic region; PFAM: IclR helix-turn-he DNA sequence : ATGCTGAAAGGTGGGTCGTTGATGGATATTCTGCGGCTGAAGGCTGAAGGCCTGTCCGTTCGGGAAATTGCCCGCCGTAC GGGGTTGTCCCGGAATACGGTGCGGAAGTACCTGCGCCAACCCGAGCCACCCCGGTACAAGCCACGGCCGCCCAAGGCGT CGAAGTTGGATCCGTTCAAGCCGTACCTCGAGCAGCGTATGGCCCAAGGGGTCTTCAATGCCAATCGTCTCCTGCAGGAG CTCCGGGCCCAGGGCTATACCGGCGGAAAGACGATTCTCAAGGAGTTCCTTCGGCCCCATCGCCCGCCCCGGGTCCCACG CGCCGTGGTGCGCTTCGAGCTCCCGCCGGGGACCCAGGCGCAGGTTGACTGGGGGGAGTTCGCCTACACCGACCTCCAGG GACGACGGCGGAAGGTTTACGGGTTTGTCATGGTCCTCAGTTACTCGCGGGCGATGTACGTGGAGTTCGTGGAACAGCAG GACCTGAGCACCCTCTTACGATGTCACCTCCACGCCTTCGCGGCCTTGGGGGGTGTCCCGAAGGAGATCCTCTACGACAA CATGAAGACCGTCGTCCTTCGCCGCCATGGTGCGGAGGTGGATTACCACCCAAGGATGCTTGACTTTGCGTTGCTTGCCG GGTTTGCCCCTCGGGTGTGCCGGCCGTATCGGGCCCAGACCAAGGGCCGGGTGGAGCGAGCCATCGGCTATCTCAAGCAG CACTTCTGGCCGGCCGTCCAGTTCACCGACCTGGCCGATCTCAACCGGCAGGTGCGGGCGTGGGTGGCCGAGGTCGCGAA TCGCCGCATCCACGGGACCACCGGGCAGCGCCCCGCCGATCGACTGGGGGAAGAGCAGGCCCATCTGACGCCCCTTCGGC CCTTGGCGGCTTTCACGTCGCTCCTGCACAAAGAACGCCGGGTGAGTCGGGATGGCTACGTGCAGTACGCGGGCAGCCGG TATGGGGTCCCCTGGCGTTATAGCGGCCGATACGTCACGGTGTTCGCGACCGAAACGGAGGTCGAGATCCGCGACGGGGA CCGGGTGATTGCCCGGCACCCTCGGGCCTTGCTGCCCGGACTGACGATCTCCCTTCCGGAGCAGTACCACGGCCTTGCTT TGGGTGGGACCCAACGTCCCGAGCCGCCCCAAGGCCAGCAGGTCGTCGGCCCGGCGGTGGAGCGCCGCTCGCTCCAGGTC TACGAAGACCTTCTTCGGGCAGGTGAACGCCGGTGA Protein sequence : MLKGGSLMDILRLKAEGLSVREIARRTGLSRNTVRKYLRQPEPPRYKPRPPKASKLDPFKPYLEQRMAQGVFNANRLLQE LRAQGYTGGKTILKEFLRPHRPPRVPRAVVRFELPPGTQAQVDWGEFAYTDLQGRRRKVYGFVMVLSYSRAMYVEFVEQQ DLSTLLRCHLHAFAALGGVPKEILYDNMKTVVLRRHGAEVDYHPRMLDFALLAGFAPRVCRPYRAQTKGRVERAIGYLKQ HFWPAVQFTDLADLNRQVRAWVAEVANRRIHGTTGQRPADRLGEEQAHLTPLRPLAAFTSLLHKERRVSRDGYVQYAGSR YGVPWRYSGRYVTVFATETEVEIRDGDRVIARHPRALLPGLTISLPEQYHGLALGGTQRPEPPQGQQVVGPAVERRSLQV YEDLLRAGERR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| y1094 | CAC43410.1 | IS100 transposase; transposase ORFA | Not tested | PAI III 536 | Protein | 6e-46 | 43 |
| YPTB1585 | YP_070113.1 | transposase | Not tested | HPI | Protein | 9e-46 | 43 |
| unnamed | CAA21403.1 | - | Not tested | HPI | Protein | 9e-46 | 43 |
| unnamed | CAB46599.1 | IS100 transposase | Not tested | HPI | Protein | 7e-46 | 43 |
| api83 | CAF28557.1 | transposase | Not tested | YAPI | Protein | 7e-46 | 43 |
| y1093 | CAD33720.1 | ORF A protein | Not tested | PAI I 536 | Protein | 6e-46 | 43 |
| s0035 | CAD33773.1 | ORF A protein | Not tested | PAI I 536 | Protein | 6e-46 | 43 |
| y1094 | CAD42088.1 | OrfA protein of IS100 transposase | Not tested | PAI II 536 | Protein | 6e-46 | 43 |
| y1093 | YP_002346890.1 | transposase for insertion sequence IS100 | Not tested | HPI | Protein | 9e-46 | 43 |
| orfA | CAE85182.1 | OrfA protein, transposase, IS100 | Not tested | PAI V 536 | Protein | 6e-46 | 43 |
| y2411 | NP_669718.1 | transposase | Not tested | HPI | Protein | 9e-46 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Tmar_0341 | YP_004101193.1 | integrase | VFG1607 | Protein | 3e-46 | 43 |
| Tmar_0341 | YP_004101193.1 | integrase | VFG1461 | Protein | 3e-46 | 43 |
| Tmar_0341 | YP_004101193.1 | integrase | VFG1514 | Protein | 3e-46 | 43 |
| Tmar_0341 | YP_004101193.1 | integrase | VFG1626 | Protein | 3e-46 | 43 |
